Detailed information NTG1012370

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABU967_RS25320
• Genome accession: NZ_CP159121
• Coordinates: 5203740..5204540 (-)
• Length: 266 a.a.
• NCBI ID: WP_049093658.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain 10034763-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5198740..5209540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU967_RS25300 (ABU967_25300)	dksA	5199320..5199775 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ABU967_RS25305 (ABU967_25305)	sfsA	5199938..5200654 (-)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
ABU967_RS25310 (ABU967_25310)	thpR	5200654..5201190 (-)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
ABU967_RS25315 (ABU967_25315)	hrpB	5201263..5203692 (+)	2430	WP_094308987.1	ATP-dependent helicase HrpB	-
ABU967_RS25320 (ABU967_25320)	pilD	5203740..5204540 (-)	801	WP_049093658.1	A24 family peptidase	Machinery gene
ABU967_RS25325 (ABU967_25325)	-	5204555..5205283 (-)	729	WP_053810754.1	type II secretion system protein N	-
ABU967_RS25330 (ABU967_25330)	-	5205273..5205758 (-)	486	WP_043521988.1	type II secretion system protein M	-
ABU967_RS25335 (ABU967_25335)	gspL	5205751..5206947 (-)	1197	WP_094308986.1	type II secretion system protein GspL	-
ABU967_RS25340 (ABU967_25340)	gspK	5206940..5207920 (-)	981	WP_094308985.1	type II secretion system minor pseudopilin GspK	-
ABU967_RS25345 (ABU967_25345)	gspJ	5207917..5208513 (-)	597	WP_094308984.1	type II secretion system minor pseudopilin GspJ	-
ABU967_RS25350 (ABU967_25350)	gspI	5208510..5208875 (-)	366	WP_004204415.1	type II secretion system minor pseudopilin GspI	-
ABU967_RS25355 (ABU967_25355)	gspH	5208872..5209387 (-)	516	WP_094308983.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29382.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=1012370 ABU967_RS25320 WP_049093658.1 5203740..5204540(-) (pilD) [Klebsiella quasipneumoniae strain 10034763-1]
MTTLAALSLHFPLIWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1012370 ABU967_RS25320 WP_049093658.1 5203740..5204540(-) (pilD) [Klebsiella quasipneumoniae strain 10034763-1]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCTCTTATCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCGGGGGCGCTGCTCGCACCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425