Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABU975_RS10625 Genome accession   NZ_CP159114
Coordinates   2227638..2228201 (-) Length   187 a.a.
NCBI ID   WP_002363544.1    Uniprot ID   -
Organism   Enterococcus faecalis strain 10033598-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2222638..2233201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU975_RS10605 (ABU975_10605) dnaB 2223093..2224460 (-) 1368 WP_002381331.1 replicative DNA helicase -
  ABU975_RS10610 (ABU975_10610) rplI 2224734..2225186 (-) 453 WP_002356023.1 50S ribosomal protein L9 -
  ABU975_RS10615 (ABU975_10615) - 2225192..2227216 (-) 2025 WP_002363542.1 DHH family phosphoesterase -
  ABU975_RS10620 (ABU975_10620) rpsR 2227373..2227612 (-) 240 WP_002356021.1 30S ribosomal protein S18 -
  ABU975_RS10625 (ABU975_10625) ssb 2227638..2228201 (-) 564 WP_002363544.1 single-stranded DNA-binding protein Machinery gene
  ABU975_RS10630 (ABU975_10630) rpsF 2228246..2228548 (-) 303 WP_002356019.1 30S ribosomal protein S6 -
  ABU975_RS10635 (ABU975_10635) gyrA 2228723..2231224 (-) 2502 WP_002361457.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20460.07 Da        Isoelectric Point: 4.6010

>NTDB_id=1012289 ABU975_RS10625 WP_002363544.1 2227638..2228201(-) (ssb) [Enterococcus faecalis strain 10033598-3]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNSFNPSSSQSQNNNG
MPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1012289 ABU975_RS10625 WP_002363544.1 2227638..2228201(-) (ssb) [Enterococcus faecalis strain 10033598-3]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AATTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAACGGT
ATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACCATT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.963

100

0.61
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.211

100

0.551

Multiple sequence alignment