Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AADG64_RS22435 | Genome accession | NZ_CP158973 |
| Coordinates | 4885979..4886482 (+) | Length | 167 a.a. |
| NCBI ID | WP_353630667.1 | Uniprot ID | - |
| Organism | Achromobacter xylosoxidans strain zafu-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4854457..4894543 | 4885979..4886482 | within | 0 |
Gene organization within MGE regions
Location: 4854457..4894543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG64_RS22225 (AADG64_22225) | - | 4854457..4858263 (-) | 3807 | WP_353630630.1 | host specificity factor TipJ family phage tail protein | - |
| AADG64_RS22230 (AADG64_22230) | - | 4858299..4858685 (-) | 387 | WP_353630631.1 | hypothetical protein | - |
| AADG64_RS22235 (AADG64_22235) | - | 4858687..4859163 (-) | 477 | WP_353630632.1 | DUF1833 family protein | - |
| AADG64_RS22240 (AADG64_22240) | - | 4859164..4859511 (-) | 348 | WP_353630633.1 | hypothetical protein | - |
| AADG64_RS22245 (AADG64_22245) | - | 4859513..4861852 (-) | 2340 | WP_353630634.1 | phage tail length tape measure family protein | - |
| AADG64_RS22250 (AADG64_22250) | - | 4861857..4862135 (-) | 279 | WP_336235749.1 | hypothetical protein | - |
| AADG64_RS22255 (AADG64_22255) | - | 4862156..4862479 (-) | 324 | WP_043223600.1 | hypothetical protein | - |
| AADG64_RS22260 (AADG64_22260) | - | 4862482..4862961 (-) | 480 | WP_048940033.1 | phage tail tube protein | - |
| AADG64_RS22265 (AADG64_22265) | - | 4863021..4863383 (-) | 363 | WP_353630635.1 | DUF3168 domain-containing protein | - |
| AADG64_RS22270 (AADG64_22270) | - | 4863383..4863871 (-) | 489 | WP_327764662.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| AADG64_RS22275 (AADG64_22275) | - | 4863868..4864398 (-) | 531 | WP_353630636.1 | methyltransferase domain-containing protein | - |
| AADG64_RS22280 (AADG64_22280) | - | 4864430..4865260 (-) | 831 | WP_353630637.1 | hypothetical protein | - |
| AADG64_RS22285 (AADG64_22285) | - | 4865272..4865730 (-) | 459 | WP_353630638.1 | hypothetical protein | - |
| AADG64_RS22290 (AADG64_22290) | - | 4865765..4866097 (-) | 333 | WP_353630639.1 | phage head closure protein | - |
| AADG64_RS22295 (AADG64_22295) | - | 4866097..4866453 (-) | 357 | WP_353630640.1 | head-tail connector protein | - |
| AADG64_RS22300 (AADG64_22300) | - | 4866450..4867241 (-) | 792 | WP_353630641.1 | hypothetical protein | - |
| AADG64_RS22305 (AADG64_22305) | - | 4867234..4868619 (-) | 1386 | WP_353630642.1 | phage portal protein | - |
| AADG64_RS22310 (AADG64_22310) | - | 4868616..4868816 (-) | 201 | WP_353630643.1 | hypothetical protein | - |
| AADG64_RS22315 (AADG64_22315) | - | 4868883..4870922 (-) | 2040 | WP_353630644.1 | phage major capsid protein | - |
| AADG64_RS22320 (AADG64_22320) | - | 4870980..4872494 (-) | 1515 | WP_353630645.1 | terminase TerL endonuclease subunit | - |
| AADG64_RS22325 (AADG64_22325) | - | 4872473..4872793 (-) | 321 | WP_353630646.1 | hypothetical protein | - |
| AADG64_RS22330 (AADG64_22330) | - | 4873376..4873723 (-) | 348 | WP_353630647.1 | hypothetical protein | - |
| AADG64_RS22335 (AADG64_22335) | - | 4873950..4874477 (-) | 528 | WP_353630648.1 | hypothetical protein | - |
| AADG64_RS22340 (AADG64_22340) | - | 4874477..4874815 (-) | 339 | WP_353630649.1 | hypothetical protein | - |
| AADG64_RS22345 (AADG64_22345) | - | 4874835..4875179 (-) | 345 | WP_353630650.1 | DUF1064 domain-containing protein | - |
| AADG64_RS22350 (AADG64_22350) | - | 4875192..4876970 (-) | 1779 | WP_353630651.1 | toprim domain-containing protein | - |
| AADG64_RS22355 (AADG64_22355) | - | 4876967..4877884 (-) | 918 | WP_353630652.1 | conserved phage C-terminal domain-containing protein | - |
| AADG64_RS22360 (AADG64_22360) | - | 4877990..4878412 (-) | 423 | WP_353630653.1 | hypothetical protein | - |
| AADG64_RS22365 (AADG64_22365) | - | 4878584..4878994 (-) | 411 | WP_353630654.1 | recombination protein NinB | - |
| AADG64_RS22370 (AADG64_22370) | - | 4878994..4879431 (-) | 438 | WP_353630655.1 | phage regulatory CII family protein | - |
| AADG64_RS22375 (AADG64_22375) | - | 4879486..4879680 (+) | 195 | WP_353630656.1 | hypothetical protein | - |
| AADG64_RS22380 (AADG64_22380) | - | 4879677..4879919 (-) | 243 | WP_327764710.1 | YdaS family helix-turn-helix protein | - |
| AADG64_RS22385 (AADG64_22385) | - | 4880005..4880727 (+) | 723 | WP_353630657.1 | S24 family peptidase | - |
| AADG64_RS22390 (AADG64_22390) | - | 4880740..4881150 (+) | 411 | WP_353630658.1 | BPTD_2524 family lipoprotein | - |
| AADG64_RS22395 (AADG64_22395) | - | 4881265..4881975 (+) | 711 | WP_353630659.1 | DUF3800 domain-containing protein | - |
| AADG64_RS22400 (AADG64_22400) | - | 4882166..4882564 (+) | 399 | WP_353630660.1 | hypothetical protein | - |
| AADG64_RS22405 (AADG64_22405) | - | 4883023..4883475 (+) | 453 | WP_353630661.1 | hypothetical protein | - |
| AADG64_RS22410 (AADG64_22410) | - | 4883890..4884162 (+) | 273 | WP_353630662.1 | hypothetical protein | - |
| AADG64_RS22415 (AADG64_22415) | - | 4884163..4884387 (+) | 225 | WP_353630663.1 | hypothetical protein | - |
| AADG64_RS22420 (AADG64_22420) | - | 4884431..4884700 (+) | 270 | WP_353630664.1 | hypothetical protein | - |
| AADG64_RS22425 (AADG64_22425) | - | 4884697..4884855 (+) | 159 | WP_353630665.1 | hypothetical protein | - |
| AADG64_RS22430 (AADG64_22430) | - | 4884858..4885979 (+) | 1122 | WP_353630666.1 | AAA family ATPase | - |
| AADG64_RS22435 (AADG64_22435) | ssb | 4885979..4886482 (+) | 504 | WP_353630667.1 | single-stranded DNA-binding protein | Machinery gene |
| AADG64_RS22440 (AADG64_22440) | - | 4886531..4887103 (+) | 573 | WP_353630668.1 | hypothetical protein | - |
| AADG64_RS22445 (AADG64_22445) | - | 4887146..4887550 (+) | 405 | WP_353630669.1 | hypothetical protein | - |
| AADG64_RS22450 (AADG64_22450) | - | 4887588..4887974 (+) | 387 | WP_353630670.1 | four helix bundle protein | - |
| AADG64_RS22455 (AADG64_22455) | - | 4888234..4889319 (+) | 1086 | WP_353630671.1 | RNA-directed DNA polymerase | - |
| AADG64_RS22460 (AADG64_22460) | - | 4889359..4889505 (+) | 147 | WP_353630672.1 | hypothetical protein | - |
| AADG64_RS22465 (AADG64_22465) | - | 4889508..4890113 (+) | 606 | WP_353630673.1 | hypothetical protein | - |
| AADG64_RS22470 (AADG64_22470) | - | 4890113..4890367 (+) | 255 | WP_353630674.1 | hypothetical protein | - |
| AADG64_RS22475 (AADG64_22475) | - | 4890370..4891182 (+) | 813 | WP_353630675.1 | hypothetical protein | - |
| AADG64_RS22480 (AADG64_22480) | - | 4891179..4892210 (+) | 1032 | WP_353630676.1 | hypothetical protein | - |
| AADG64_RS22485 (AADG64_22485) | - | 4892203..4892418 (+) | 216 | WP_353630677.1 | hypothetical protein | - |
| AADG64_RS22490 (AADG64_22490) | - | 4892418..4892627 (+) | 210 | WP_353630678.1 | hypothetical protein | - |
| AADG64_RS22495 (AADG64_22495) | - | 4892761..4893216 (+) | 456 | WP_353630679.1 | HAD domain-containing protein | - |
| AADG64_RS22500 (AADG64_22500) | - | 4893300..4893521 (+) | 222 | WP_353630680.1 | DUF4224 domain-containing protein | - |
| AADG64_RS22505 (AADG64_22505) | - | 4893518..4894543 (+) | 1026 | WP_353630681.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18313.35 Da Isoelectric Point: 7.3565
>NTDB_id=1012124 AADG64_RS22435 WP_353630667.1 4885979..4886482(+) (ssb) [Achromobacter xylosoxidans strain zafu-3]
MASVNKVILVGNLGRDPEVRYSPDGGAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREPIGQGGHAADAPDGSDSARPARERSTAHNSQSGAADMSDDIPFAQVG
GRKAHYL
MASVNKVILVGNLGRDPEVRYSPDGGAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREPIGQGGHAADAPDGSDSARPARERSTAHNSQSGAADMSDDIPFAQVG
GRKAHYL
Nucleotide
Download Length: 504 bp
>NTDB_id=1012124 AADG64_RS22435 WP_353630667.1 4885979..4886482(+) (ssb) [Achromobacter xylosoxidans strain zafu-3]
ATGGCCAGCGTTAACAAAGTCATTCTCGTGGGCAACCTGGGACGCGATCCCGAGGTTCGCTACAGCCCAGACGGCGGGGC
CATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTGTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTAGCCGACCAGATGCA
GATGCTGGGCGGGCGCGAGCCCATCGGGCAAGGCGGGCACGCTGCCGACGCTCCTGATGGAAGTGATTCGGCACGGCCTG
CCCGGGAACGGTCAACTGCACACAATTCACAAAGCGGTGCTGCCGATATGTCCGATGACATCCCGTTCGCGCAAGTGGGC
GGCCGGAAAGCTCACTACCTGTAA
ATGGCCAGCGTTAACAAAGTCATTCTCGTGGGCAACCTGGGACGCGATCCCGAGGTTCGCTACAGCCCAGACGGCGGGGC
CATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTGTACATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTAGCCGACCAGATGCA
GATGCTGGGCGGGCGCGAGCCCATCGGGCAAGGCGGGCACGCTGCCGACGCTCCTGATGGAAGTGATTCGGCACGGCCTG
CCCGGGAACGGTCAACTGCACACAATTCACAAAGCGGTGCTGCCGATATGTCCGATGACATCCCGTTCGCGCAAGTGGGC
GGCCGGAAAGCTCACTACCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
53.371 |
100 |
0.569 |
| ssb | Neisseria meningitidis MC58 |
48.295 |
100 |
0.509 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.509 |
| ssb | Glaesserella parasuis strain SC1401 |
44.751 |
100 |
0.485 |