Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AADG64_RS26830 Genome accession   NZ_CP158973
Coordinates   5794196..5795239 (-) Length   347 a.a.
NCBI ID   WP_306414938.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain zafu-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5789196..5800239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG64_RS26825 (AADG64_26825) - 5792404..5794062 (+) 1659 WP_024070383.1 CYTH and CHAD domain-containing protein -
  AADG64_RS26830 (AADG64_26830) pilA 5794196..5795239 (-) 1044 WP_306414938.1 signal recognition particle-docking protein FtsY Machinery gene
  AADG64_RS26835 (AADG64_26835) rsmD 5795613..5796179 (+) 567 WP_054499185.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AADG64_RS26840 (AADG64_26840) coaD 5796238..5796741 (+) 504 WP_006385942.1 pantetheine-phosphate adenylyltransferase -
  AADG64_RS26845 (AADG64_26845) - 5796920..5797171 (+) 252 WP_006385941.1 YfhL family 4Fe-4S dicluster ferredoxin -
  AADG64_RS26850 (AADG64_26850) - 5797168..5798388 (+) 1221 WP_054497279.1 benzoate/H(+) symporter BenE family transporter -
  AADG64_RS26855 (AADG64_26855) - 5798453..5798839 (-) 387 WP_006385939.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 35985.55 Da        Isoelectric Point: 8.5379

>NTDB_id=1012126 AADG64_RS26830 WP_306414938.1 5794196..5795239(-) (pilA) [Achromobacter xylosoxidans strain zafu-3]
MAPPPVAPAPVASPPAVTPPAPVAAAPAAIAPAPAAPEPEAAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFEEL
ESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRAQPLVVMIAGVNGAGKTTSIG
KLAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARGMGVVMVDTAGRLPTQLH
LMEELKKIRRVIGKADPAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPV
YWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1012126 AADG64_RS26830 WP_306414938.1 5794196..5795239(-) (pilA) [Achromobacter xylosoxidans strain zafu-3]
ATTGCCCCGCCGCCGGTTGCTCCCGCGCCGGTGGCATCGCCGCCCGCCGTCACGCCTCCGGCGCCGGTCGCCGCTGCCCC
CGCCGCCATCGCGCCGGCGCCCGCCGCGCCCGAGCCGGAAGCGGCGCCCAAGAAGGCGTCCTGGCTGTCGCGGCTCAAGC
AGGGCCTGTCGCGCACCGGCCAGAGCATTGGCGGCATCTTCGTCGGCGTCAAGGTCGACGAGAACCTGTTCGAGGAACTC
GAATCGGCGCTCATTATGGCCGATGCCGGCCTGGAAGCCACCGAGAAGCTGCTGACCGCGCTGCGCGCGCGGGTCAAGAA
AGAACGCATCGAGGACCCGGCCAAGGTCAAGGCCGCGCTGCGCCAGCTGCTGGCCGACCACCTGCGTCCGCTGGAGCGCG
CCTTCGACCTGAAGCGCGCGCAGCCGCTGGTGGTGATGATCGCGGGCGTCAACGGCGCGGGCAAGACCACGTCGATCGGC
AAGCTGGCGCACACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCGCGA
GCAACTGATCGAATGGGGCAGCCGCAACAACGTCACCGTGATCTCGCAGGATGGCGGCGACCCGGCGGCGGTGGCGTTCG
ACTCGGTCAACGCCGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTGGACACGGCCGGCCGCCTGCCGACCCAGCTGCAC
CTGATGGAAGAACTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGACCCGGCCGCGCCGCACGAGGTGCTGCTGGTGGT
GGACGGCAACACCGGCCAGAACGCGTTGGCGCAGATCCGCGCGTTCGACGCGGCCATCAACCTGACGGGCCTGGTCGTGA
CCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCGGTGGCGGCGGGCAGCCAGGGCGTGCGGCCGATCCCGGTG
TACTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCGTTCGTGGCCGACGAATTCGCCGGAGCCTTGCTGGCCGA
CTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(143-345)

SRP54-type protein, helical bundle domain (SRP54_N)

(61-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.17

88.184

0.513

Multiple sequence alignment