Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABUH86_RS14915 Genome accession   NZ_CP158669
Coordinates   3031644..3032288 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain XY40-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3026644..3037288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS14880 (ABUH86_14880) - 3027829..3028260 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  ABUH86_RS14885 (ABUH86_14885) - 3028260..3028601 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ABUH86_RS14890 (ABUH86_14890) - 3028594..3030075 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  ABUH86_RS14895 (ABUH86_14895) - 3030081..3030557 (+) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  ABUH86_RS14900 (ABUH86_14900) - 3030557..3030841 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ABUH86_RS14905 (ABUH86_14905) mnhG 3030825..3031199 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ABUH86_RS14910 (ABUH86_14910) - 3031239..3031622 (-) 384 WP_353406438.1 hotdog fold thioesterase -
  ABUH86_RS14915 (ABUH86_14915) comA 3031644..3032288 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ABUH86_RS14920 (ABUH86_14920) - 3032369..3034660 (-) 2292 Protein_2871 histidine kinase -
  ABUH86_RS14925 (ABUH86_14925) comX 3034672..3034836 (-) 165 WP_061581461.1 competence pheromone ComX -
  ABUH86_RS14930 (ABUH86_14930) - 3034836..3035714 (-) 879 WP_038460875.1 polyprenyl synthetase family protein -
  ABUH86_RS14935 (ABUH86_14935) degQ 3035899..3036039 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABUH86_RS14940 (ABUH86_14940) - 3036504..3036845 (+) 342 WP_353406442.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1011943 ABUH86_RS14915 WP_003152052.1 3031644..3032288(-) (comA) [Bacillus velezensis strain XY40-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1011943 ABUH86_RS14915 WP_003152052.1 3031644..3032288(-) (comA) [Bacillus velezensis strain XY40-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment