Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABUH86_RS02060 Genome accession   NZ_CP158669
Coordinates   410563..411516 (+) Length   317 a.a.
NCBI ID   WP_059366593.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405563..416516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS02035 (ABUH86_02035) - 405609..407042 (+) 1434 WP_353407176.1 HAMP domain-containing sensor histidine kinase -
  ABUH86_RS02040 (ABUH86_02040) rapC 407195..408343 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  ABUH86_RS02045 (ABUH86_02045) phrC 408327..408446 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABUH86_RS02050 (ABUH86_02050) - 408595..408690 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  ABUH86_RS02055 (ABUH86_02055) - 408785..410149 (-) 1365 WP_353407181.1 aspartate kinase -
  ABUH86_RS02060 (ABUH86_02060) ceuB 410563..411516 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  ABUH86_RS02065 (ABUH86_02065) - 411506..412453 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  ABUH86_RS02070 (ABUH86_02070) - 412447..413205 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  ABUH86_RS02075 (ABUH86_02075) - 413227..414171 (+) 945 WP_025284230.1 siderophore ABC transporter substrate-binding protein -
  ABUH86_RS02080 (ABUH86_02080) - 414213..415637 (-) 1425 WP_220006968.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=1011895 ABUH86_RS02060 WP_059366593.1 410563..411516(+) (ceuB) [Bacillus velezensis strain XY40-1]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1011895 ABUH86_RS02060 WP_059366593.1 410563..411516(+) (ceuB) [Bacillus velezensis strain XY40-1]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATTCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAAGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment