Detailed information NTG1011780

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: H1W86_RS06605
• Genome accession: NZ_LR822042
• Coordinates: 1273765..1274691 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus isolate STH_CIRM_1358
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1268765..1279691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1W86_RS06575 (STHERMO_1444)	-	1268842..1269636 (-)	795	WP_180479479.1	HAD-IIB family hydrolase	-
H1W86_RS06580 (STHERMO_1445)	-	1269821..1270198 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
H1W86_RS06585 (STHERMO_1446)	-	1270203..1270901 (+)	699	WP_180479481.1	ABC transporter ATP-binding protein	-
H1W86_RS06590 (STHERMO_1447)	-	1270913..1271698 (+)	786	WP_180479483.1	ABC transporter permease	-
H1W86_RS06595 (STHERMO_1448)	-	1271748..1272677 (-)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	-
H1W86_RS06600 (STHERMO_1449)	amiE	1272670..1273755 (-)	1086	WP_180479485.1	ABC transporter ATP-binding protein	Regulator
H1W86_RS06605 (STHERMO_1450)	amiD	1273765..1274691 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
H1W86_RS06610 (STHERMO_1451)	amiC	1274691..1276184 (-)	1494	WP_180479487.1	ABC transporter permease	Regulator
H1W86_RS06615 (STHERMO_1452)	amiA	1276246..1278213 (-)	1968	WP_180479489.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=1011780 H1W86_RS06605 WP_002946409.1 1273765..1274691(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1358]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=1011780 H1W86_RS06605 WP_002946409.1 1273765..1274691(-) (amiD) [Streptococcus thermophilus isolate STH_CIRM_1358]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964