Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPOKI102_RS02950 Genome accession   NZ_CP006820
Coordinates   601148..602668 (+) Length   506 a.a.
NCBI ID   WP_025275847.1    Uniprot ID   -
Organism   Helicobacter pylori oki102     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 596148..607668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI102_RS02920 (HPOKI102_03055) moaC 596296..596772 (+) 477 WP_025275843.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPOKI102_RS02925 (HPOKI102_03060) hpaA 596891..597673 (+) 783 WP_025275844.1 flagellar sheath lipoprotein HpaA -
  HPOKI102_RS02930 (HPOKI102_03065) - 597702..598538 (+) 837 WP_025275845.1 outer membrane protein -
  HPOKI102_RS02935 (HPOKI102_03070) tig 598650..600005 (+) 1356 WP_025275846.1 trigger factor -
  HPOKI102_RS02940 (HPOKI102_03075) clpP 600026..600613 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPOKI102_RS02945 (HPOKI102_03080) def 600618..601145 (+) 528 WP_001185825.1 peptide deformylase -
  HPOKI102_RS02950 (HPOKI102_03085) comM 601148..602668 (+) 1521 WP_025275847.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPOKI102_RS02955 (HPOKI102_03090) - 602693..604753 (+) 2061 WP_025275848.1 heavy metal translocating P-type ATPase -
  HPOKI102_RS02960 (HPOKI102_03095) - 604794..606062 (+) 1269 WP_025275849.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57316.39 Da        Isoelectric Point: 8.5425

>NTDB_id=101158 HPOKI102_RS02950 WP_025275847.1 601148..602668(+) (comM) [Helicobacter pylori oki102]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIVPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSSTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
RNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACEDIEKTHVLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=101158 HPOKI102_RS02950 WP_025275847.1 601148..602668(+) (comM) [Helicobacter pylori oki102]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAACTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGTGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGACTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCCCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
AAGAGCCAAAACCTGGCGAAATCGCGTTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCCTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
AGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAGAGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAACAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAGGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAAACTCATGTGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-404)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.036

100

0.97
  comM Acinetobacter baylyi ADP1

35.812

100

0.362

Multiple sequence alignment