Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABCR88_RS30840 Genome accession   NZ_CP158490
Coordinates   6693768..6694172 (-) Length   134 a.a.
NCBI ID   WP_011064001.1    Uniprot ID   Q4K4E8
Organism   Pseudomonas sp. W17     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6688768..6699172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCR88_RS30825 (ABCR88_30825) - 6690591..6692654 (-) 2064 WP_011063998.1 methyl-accepting chemotaxis protein -
  ABCR88_RS30830 (ABCR88_30830) - 6692795..6693334 (-) 540 WP_011063999.1 chemotaxis protein CheW -
  ABCR88_RS30835 (ABCR88_30835) pilH 6693345..6693710 (-) 366 WP_011064000.1 twitching motility response regulator PilH -
  ABCR88_RS30840 (ABCR88_30840) pilG 6693768..6694172 (-) 405 WP_011064001.1 twitching motility response regulator PilG Regulator
  ABCR88_RS30845 (ABCR88_30845) gshB 6694409..6695362 (+) 954 WP_011064002.1 glutathione synthase -
  ABCR88_RS30850 (ABCR88_30850) - 6695462..6696361 (+) 900 WP_011064003.1 energy transducer TonB -
  ABCR88_RS30855 (ABCR88_30855) - 6696447..6697016 (+) 570 WP_041120245.1 YqgE/AlgH family protein -
  ABCR88_RS30860 (ABCR88_30860) ruvX 6697016..6697453 (+) 438 WP_015637366.1 Holliday junction resolvase RuvX -
  ABCR88_RS30865 (ABCR88_30865) pyrR 6697569..6698075 (+) 507 WP_210457927.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABCR88_RS30870 (ABCR88_30870) - 6698101..6699105 (+) 1005 WP_011064007.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14743.28 Da        Isoelectric Point: 7.3231

>NTDB_id=1011579 ABCR88_RS30840 WP_011064001.1 6693768..6694172(-) (pilG) [Pseudomonas sp. W17]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNNSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1011579 ABCR88_RS30840 WP_011064001.1 6693768..6694172(-) (pilG) [Pseudomonas sp. W17]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGTTGCGAGGTCATCACCGCAGTGGACGGCTTCGAAGCCCTGTCCAAGATCGTCGACCATCACCCCGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGACGGCTATCAGACCTGTGCGCTGGTGAAGAACAACAGCGCGTTCAAG
TCCATCCCGGTGATCATGCTGTCTTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCCATGTCCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4K4E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

44.444

87.313

0.388

Multiple sequence alignment