Detailed information NTG1011565

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABCR88_RS09550
• Genome accession: NZ_CP158490
• Coordinates: 2054303..2056534 (+)
• Length: 743 a.a.
• NCBI ID: WP_350404459.1
• Uniprot ID: -
• Organism: Pseudomonas sp. W17
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2049303..2061534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABCR88_RS09525 (ABCR88_09525)	-	2050428..2051087 (+)	660	WP_232644428.1	transglutaminase family protein	-
ABCR88_RS09530 (ABCR88_09530)	-	2051130..2051753 (+)	624	WP_041116771.1	glutathione S-transferase	-
ABCR88_RS09535 (ABCR88_09535)	-	2051886..2052818 (+)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
ABCR88_RS09540 (ABCR88_09540)	-	2052815..2053594 (+)	780	WP_011060097.1	ABC transporter permease	-
ABCR88_RS09545 (ABCR88_09545)	-	2053648..2054163 (-)	516	WP_015634695.1	DUF2062 domain-containing protein	-
ABCR88_RS09550 (ABCR88_09550)	comA	2054303..2056534 (+)	2232	WP_350404459.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABCR88_RS09555 (ABCR88_09555)	exbB	2056637..2057272 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABCR88_RS09560 (ABCR88_09560)	-	2057269..2057697 (+)	429	WP_011060101.1	biopolymer transporter ExbD	-
ABCR88_RS09565 (ABCR88_09565)	lpxK	2057697..2058707 (+)	1011	WP_015634697.1	tetraacyldisaccharide 4'-kinase	-
ABCR88_RS09570 (ABCR88_09570)	-	2058732..2058917 (+)	186	WP_011060103.1	Trm112 family protein	-
ABCR88_RS09575 (ABCR88_09575)	kdsB	2058914..2059678 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABCR88_RS09580 (ABCR88_09580)	-	2059678..2060142 (+)	465	WP_041116777.1	low molecular weight protein-tyrosine-phosphatase	-
ABCR88_RS09585 (ABCR88_09585)	murB	2060139..2061158 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81344.71 Da
• Isoelectric Point: 10.8644

>NTDB_id=1011565 ABCR88_RS09550 WP_350404459.1 2054303..2056534(+) (comA) [Pseudomonas sp. W17]
MRSAMLALAAGLLALGFMTALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARREQLPRRMRLAWREGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLSRHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAVGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GVFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=1011565 ABCR88_RS09550 WP_350404459.1 2054303..2056534(+) (comA) [Pseudomonas sp. W17]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCAGGGCTGCTGGCGCTGGGTTTCATGACGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTGTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCAGCT
GCCCCGGCGCATGCGGCTGGCCTGGCGTGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCTCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACTTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGTCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCGTTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGAGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTTACCGGGGACATCGACGCTCGTGCCGAA
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGTACCTCTTCATC
CATGGCCTTGCTGCAGCGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGTCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGTGCCCTGAGGCTGCAACTG
GGGGTCTTCGGGGCGGCACATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.296	96.501	0.62
comA	Ralstonia pseudosolanacearum GMI1000	32.773	100	0.367