Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABR328_RS06465 Genome accession   NZ_CP158462
Coordinates   1167310..1167906 (-) Length   198 a.a.
NCBI ID   WP_003662304.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain TCI727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1162310..1172906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR328_RS06435 (ABR328_06435) - 1162798..1163013 (-) 216 WP_011673932.1 Blp family class II bacteriocin -
  ABR328_RS06440 (ABR328_06440) - 1163198..1163416 (-) 219 WP_011673930.1 Blp family class II bacteriocin -
  ABR328_RS06445 (ABR328_06445) - 1163834..1164028 (-) 195 WP_003600287.1 hypothetical protein -
  ABR328_RS06450 (ABR328_06450) cydB 1164055..1165074 (-) 1020 WP_003662302.1 cytochrome d ubiquinol oxidase subunit II -
  ABR328_RS06455 (ABR328_06455) - 1165067..1166545 (-) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  ABR328_RS06460 (ABR328_06460) rpsR 1166987..1167223 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  ABR328_RS06465 (ABR328_06465) ssb 1167310..1167906 (-) 597 WP_003662304.1 single-stranded DNA-binding protein Machinery gene
  ABR328_RS06470 (ABR328_06470) rpsF 1167937..1168233 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  ABR328_RS06475 (ABR328_06475) ssb 1168361..1168792 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  ABR328_RS06480 (ABR328_06480) deoC 1168975..1169679 (+) 705 WP_016371117.1 deoxyribose-phosphate aldolase -
  ABR328_RS06485 (ABR328_06485) gyrA 1169784..1172405 (-) 2622 WP_011673928.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21148.91 Da        Isoelectric Point: 4.9056

>NTDB_id=1011377 ABR328_RS06465 WP_003662304.1 1167310..1167906(-) (ssb) [Lacticaseibacillus paracasei strain TCI727]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1011377 ABR328_RS06465 WP_003662304.1 1167310..1167906(-) (ssb) [Lacticaseibacillus paracasei strain TCI727]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment