Detailed information NTG1011360

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABRT03_RS22865
• Genome accession: NZ_CP158459
• Coordinates: 4850936..4851733 (+)
• Length: 265 a.a.
• NCBI ID: WP_049094324.1
• Uniprot ID: -
• Organism: Klebsiella oxytoca strain KN
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4845936..4856733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRT03_RS22830 (ABRT03_22830)	gspH	4846074..4846586 (+)	513	WP_023329261.1	type II secretion system minor pseudopilin GspH	-
ABRT03_RS22835 (ABRT03_22835)	gspI	4846583..4846948 (+)	366	WP_004110668.1	type II secretion system minor pseudopilin GspI	-
ABRT03_RS22840 (ABRT03_22840)	gspJ	4846945..4847541 (+)	597	WP_004110660.1	type II secretion system minor pseudopilin GspJ	-
ABRT03_RS22845 (ABRT03_22845)	gspK	4847538..4848518 (+)	981	WP_032728914.1	type II secretion system minor pseudopilin GspK	-
ABRT03_RS22850 (ABRT03_22850)	gspL	4848511..4849707 (+)	1197	WP_032728913.1	type II secretion system protein GspL	-
ABRT03_RS22855 (ABRT03_22855)	-	4849700..4850185 (+)	486	WP_032728912.1	type II secretion system protein M	-
ABRT03_RS22860 (ABRT03_22860)	-	4850175..4850933 (+)	759	WP_032728911.1	type II secretion system protein N	-
ABRT03_RS22865 (ABRT03_22865)	pilD	4850936..4851733 (+)	798	WP_049094324.1	A24 family peptidase	Machinery gene
ABRT03_RS22870 (ABRT03_22870)	hrpB	4851831..4854260 (-)	2430	WP_032728910.1	ATP-dependent helicase HrpB	-
ABRT03_RS22875 (ABRT03_22875)	thpR	4854333..4854869 (+)	537	WP_004108002.1	RNA 2',3'-cyclic phosphodiesterase	-
ABRT03_RS22880 (ABRT03_22880)	sfsA	4854869..4855585 (+)	717	WP_004108004.1	DNA/RNA nuclease SfsA	-
ABRT03_RS22885 (ABRT03_22885)	dksA	4855750..4856205 (+)	456	WP_004098689.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29182.99 Da
• Isoelectric Point: 8.3391

>NTDB_id=1011360 ABRT03_RS22865 WP_049094324.1 4850936..4851733(+) (pilD) [Klebsiella oxytoca strain KN]
MENIALLPEFAAQFPLIWGGFLFLSGLAFGSFFNVVIHRLPLMMEYAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
KGRSRCCGRPISRRYPLMELATGALFMLVGYLIPPGMPLLGGLILLSLLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLT
DLFAPLAEAVVGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPHTLLLASASGLIWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWGQV

Nucleotide

• Length: 798 bp

>NTDB_id=1011360 ABRT03_RS22865 WP_049094324.1 4850936..4851733(+) (pilD) [Klebsiella oxytoca strain KN]
GTGGAAAACATCGCATTGTTACCCGAGTTCGCCGCGCAATTCCCGTTAATCTGGGGCGGTTTTTTATTCTTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAGTACGCAGAGGGAGTGAATCTCTGCC
TCCCCGCATCGTTCTGTCCGCAGTGCCGTCAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AAGGGGCGTTCGCGCTGCTGCGGGCGACCGATTTCACGTCGCTATCCGCTGATGGAGCTGGCGACCGGCGCGCTGTTTAT
GCTGGTCGGGTACCTGATCCCTCCTGGCATGCCGCTGCTGGGCGGGTTAATTTTATTGTCGCTGCTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACTCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTACC
GATCTCTTCGCGCCGCTGGCGGAGGCGGTCGTTGGCGCGATGGCCGGGTATCTATCGCTGTGGTCAGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGTGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCTGGC
AGGCGCTGCCGCATACGCTGCTGCTGGCTTCCGCCAGCGGCCTGATCTGGACGCTGCTGCAGCGCCTGGTAACCCGTCGT
TCGCTCGAACAGCCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGGGCCAGGTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-110)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.425	98.491	0.487
pilD	Vibrio campbellii strain DS40M4	44.043	100	0.46
pilD	Neisseria gonorrhoeae MS11	47.826	95.472	0.457
pilD	Acinetobacter nosocomialis M2	45.56	97.736	0.445
pilD	Acinetobacter baumannii D1279779	45.174	97.736	0.442