Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABR391_RS05585 | Genome accession | NZ_CP158455 |
| Coordinates | 1156825..1157343 (+) | Length | 172 a.a. |
| NCBI ID | WP_003648134.1 | Uniprot ID | A0A133PDF0 |
| Organism | Lactobacillus gasseri strain TCI943 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1151825..1162343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABR391_RS05570 (ABR391_05565) | gyrB | 1151841..1153808 (+) | 1968 | WP_020807247.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ABR391_RS05575 (ABR391_05570) | gyrA | 1153819..1156308 (+) | 2490 | WP_020807248.1 | DNA gyrase subunit A | - |
| ABR391_RS05580 (ABR391_05575) | rpsF | 1156495..1156791 (+) | 297 | WP_003648136.1 | 30S ribosomal protein S6 | - |
| ABR391_RS05585 (ABR391_05580) | ssb | 1156825..1157343 (+) | 519 | WP_003648134.1 | single-stranded DNA-binding protein | Machinery gene |
| ABR391_RS05590 (ABR391_05585) | rpsR | 1157368..1157604 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| ABR391_RS05595 (ABR391_05590) | - | 1157699..1158616 (+) | 918 | WP_020807249.1 | magnesium transporter CorA family protein | - |
| ABR391_RS05600 (ABR391_05595) | - | 1158722..1160740 (+) | 2019 | WP_350353503.1 | DHH family phosphoesterase | - |
| ABR391_RS05605 (ABR391_05600) | rplI | 1160752..1161207 (+) | 456 | WP_003649726.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18499.16 Da Isoelectric Point: 4.7531
>NTDB_id=1011334 ABR391_RS05585 WP_003648134.1 1156825..1157343(+) (ssb) [Lactobacillus gasseri strain TCI943]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1011334 ABR391_RS05585 WP_003648134.1 1156825..1157343(+) (ssb) [Lactobacillus gasseri strain TCI943]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.494 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.432 |
100 |
0.506 |