Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABR336_RS05045 | Genome accession | NZ_CP158454 |
| Coordinates | 936577..937152 (+) | Length | 191 a.a. |
| NCBI ID | WP_011543464.1 | Uniprot ID | A0AAV5PJF2 |
| Organism | Lactobacillus delbrueckii subsp. bulgaricus strain TCI904 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 931577..942152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABR336_RS05030 (ABR336_05030) | gyrB | 931582..933543 (+) | 1962 | WP_011677861.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ABR336_RS05035 (ABR336_05035) | gyrA | 933556..936027 (+) | 2472 | WP_011677862.1 | DNA gyrase subunit A | - |
| ABR336_RS05040 (ABR336_05040) | rpsF | 936243..936536 (+) | 294 | WP_003612647.1 | 30S ribosomal protein S6 | - |
| ABR336_RS05045 (ABR336_05045) | ssb | 936577..937152 (+) | 576 | WP_011543464.1 | single-stranded DNA-binding protein | Machinery gene |
| ABR336_RS05050 (ABR336_05050) | rpsR | 937179..937415 (+) | 237 | WP_003622127.1 | 30S ribosomal protein S18 | - |
| ABR336_RS05055 (ABR336_05055) | - | 937556..939577 (+) | 2022 | WP_011543466.1 | DHH family phosphoesterase | - |
| ABR336_RS05060 (ABR336_05060) | rplI | 939600..940055 (+) | 456 | WP_014564436.1 | 50S ribosomal protein L9 | - |
| ABR336_RS05065 (ABR336_05065) | dnaB | 940079..941449 (+) | 1371 | WP_003622122.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 20582.25 Da Isoelectric Point: 4.6437
>NTDB_id=1011317 ABR336_RS05045 WP_011543464.1 936577..937152(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain TCI904]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
Nucleotide
Download Length: 576 bp
>NTDB_id=1011317 ABR336_RS05045 WP_011543464.1 936577..937152(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain TCI904]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.333 |
100 |
0.586 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.597 |
100 |
0.466 |