Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   H1X38_RS08785 Genome accession   NZ_LR822035
Coordinates   1704840..1705157 (-) Length   105 a.a.
NCBI ID   WP_002952035.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1051     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1699840..1710157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X38_RS08755 (STHERMO_1968) - 1700200..1700862 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  H1X38_RS08760 (STHERMO_1969) - 1700959..1701402 (-) 444 WP_041829335.1 hypothetical protein -
  H1X38_RS10150 (STHERMO_1970) - 1701476..1701895 (-) 420 WP_014727721.1 CPBP family intramembrane glutamic endopeptidase -
  H1X38_RS08770 (STHERMO_1972) - 1702144..1702341 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  H1X38_RS08775 (STHERMO_1973) - 1702590..1703783 (-) 1194 WP_180484888.1 acetate kinase -
  H1X38_RS08780 (STHERMO_1974) comGH 1703839..1704795 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H1X38_RS08785 (STHERMO_1975) comGG 1704840..1705157 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  H1X38_RS08790 (STHERMO_1976) comGF 1705135..1705572 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H1X38_RS08795 (STHERMO_1977) comGE 1705556..1705849 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  H1X38_RS08800 (STHERMO_1978) comGD 1705821..1706249 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H1X38_RS08805 (STHERMO_1979) comGC 1706209..1706535 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  H1X38_RS08810 (STHERMO_1980) comGB 1706532..1707632 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  H1X38_RS08815 (STHERMO_1981) comGA/cglA/cilD 1707514..1708455 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  H1X38_RS08820 (STHERMO_1982) - 1708536..1708898 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11824.93 Da        Isoelectric Point: 10.6334

>NTDB_id=1011193 H1X38_RS08785 WP_002952035.1 1704840..1705157(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_1051]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1011193 H1X38_RS08785 WP_002952035.1 1704840..1705157(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_1051]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362

Multiple sequence alignment