Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LLUC023_RS11635 Genome accession   NZ_CP158368
Coordinates   2255072..2255263 (-) Length   63 a.a.
NCBI ID   WP_041167484.1    Uniprot ID   A0AA47LWC5
Organism   Lactococcus cremoris strain UC023     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2251576..2255090 2255072..2255263 flank -18


Gene organization within MGE regions


Location: 2251576..2255263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC023_RS11615 (LLUC023_11625) - 2251576..2252751 (+) 1176 WP_003138385.1 IS256-like element IS905 family transposase -
  LLUC023_RS11620 (LLUC023_11630) comGB 2252798..2253283 (-) 486 WP_242515029.1 type II secretion system F family protein Machinery gene
  LLUC023_RS11625 (LLUC023_11635) - 2253276..2254097 (-) 822 Protein_2265 ATPase, T2SS/T4P/T4SS family -
  LLUC023_RS11630 (LLUC023_11640) - 2254200..2255090 (+) 891 WP_396419901.1 IS982 family transposase -
  LLUC023_RS11635 (LLUC023_11645) comGA 2255072..2255263 (-) 192 WP_041167484.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7241.49 Da        Isoelectric Point: 4.3901

>NTDB_id=1011032 LLUC023_RS11635 WP_041167484.1 2255072..2255263(-) (comGA) [Lactococcus cremoris strain UC023]
MVQKKAQELIQKAIEMEASDIYLIASGNLYKIYIRQQLGRTLIEELNQEIGLPELLVDYLGMT

Nucleotide


Download         Length: 192 bp        

>NTDB_id=1011032 LLUC023_RS11635 WP_041167484.1 2255072..2255263(-) (comGA) [Lactococcus cremoris strain UC023]
ATGGTACAGAAAAAAGCACAAGAACTCATTCAAAAGGCAATTGAGATGGAGGCTTCTGATATTTATTTAATTGCTTCAGG
AAATCTTTATAAGATATATATTCGTCAACAATTAGGGCGAACTTTAATAGAGGAACTTAACCAAGAGATTGGTTTACCCG
AATTGCTAGTTGATTATTTAGGCATGACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Lactococcus lactis subsp. cremoris KW2

96.226

84.127

0.81

Multiple sequence alignment