Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H1W90_RS06385 Genome accession   NZ_LR822033
Coordinates   1230803..1231483 (-) Length   226 a.a.
NCBI ID   WP_082309021.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225803..1236483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS06365 (STHERMO_1418) - 1226355..1226849 (-) 495 WP_014621752.1 YkgJ family cysteine cluster protein -
  H1W90_RS06370 (STHERMO_1419) - 1226934..1228934 (-) 2001 WP_180481040.1 ABC transporter permease -
  H1W90_RS06375 (STHERMO_1420) - 1228936..1229694 (-) 759 WP_014608483.1 ABC transporter ATP-binding protein -
  H1W90_RS06380 (STHERMO_1421) - 1229839..1230813 (-) 975 WP_011227354.1 sensor histidine kinase -
  H1W90_RS06385 (STHERMO_1422) braR 1230803..1231483 (-) 681 WP_082309021.1 response regulator transcription factor Regulator
  H1W90_RS06390 (STHERMO_1423) - 1231934..1232514 (+) 581 Protein_1226 xanthine phosphoribosyltransferase -
  H1W90_RS10310 (STHERMO_1424) - 1232603..1233073 (+) 471 WP_260213438.1 solute carrier family 23 protein -
  H1W90_RS10315 (STHERMO_1426) - 1233109..1233783 (+) 675 WP_260213439.1 solute carrier family 23 protein -
  H1W90_RS06400 (STHERMO_1427) - 1233911..1235260 (+) 1350 WP_082309023.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26042.41 Da        Isoelectric Point: 5.1543

>NTDB_id=1010942 H1W90_RS06385 WP_082309021.1 1230803..1231483(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_1048]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQNLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFEHAGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIGTKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1010942 H1W90_RS06385 WP_082309021.1 1230803..1231483(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAATCTTTTGGAATATATGGGTG
TGATTTTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACCAAGAACGAGTTTCAGATTTTA
CAAGTTCTCTTCGAACATGCTGGTAATATCGTTAGTCGGGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAATACCCTGTCTGTCAATGTGGCACGTTTACGTAAGAAGTTAGAGGCTGTTGGTTTGAAGGACTTTATTGGAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504
  micA Streptococcus pneumoniae Cp1015

35.043

100

0.363

Multiple sequence alignment