Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H1W91_RS06390 Genome accession   NZ_LR822032
Coordinates   1216971..1217651 (-) Length   226 a.a.
NCBI ID   WP_164178184.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1050     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211971..1222651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W91_RS06370 (STHERMO_1385) - 1212523..1213017 (-) 495 WP_084829714.1 YkgJ family cysteine cluster protein -
  H1W91_RS06375 (STHERMO_1386) - 1213102..1215102 (-) 2001 WP_180477056.1 ABC transporter permease -
  H1W91_RS06380 (STHERMO_1387) - 1215104..1215862 (-) 759 WP_014608483.1 ABC transporter ATP-binding protein -
  H1W91_RS06385 (STHERMO_1388) - 1216007..1216981 (-) 975 WP_022097083.1 sensor histidine kinase -
  H1W91_RS06390 (STHERMO_1389) braR 1216971..1217651 (-) 681 WP_164178184.1 response regulator transcription factor Regulator
  H1W91_RS06395 (STHERMO_1390) - 1218102..1218682 (+) 581 Protein_1206 xanthine phosphoribosyltransferase -
  H1W91_RS06400 - 1218682..1219952 (+) 1271 Protein_1207 nucleobase:cation symporter-2 family protein -
  H1W91_RS06405 (STHERMO_1395) - 1220080..1221429 (+) 1350 WP_087010026.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26114.48 Da        Isoelectric Point: 5.0048

>NTDB_id=1010833 H1W91_RS06390 WP_164178184.1 1216971..1217651(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_1050]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQNLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFEHAGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1010833 H1W91_RS06390 WP_164178184.1 1216971..1217651(-) (braR) [Streptococcus thermophilus isolate STH_CIRM_1050]
ATGCATAAAATTTTATTAGTTGAAGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAATCTTTTGGAATATATGGGTG
TGATTTTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACCAAGAACGAGTTTCAGATTTTA
CAAGTTCTCTTCGAACATGCTGGTAATATCGTTAGTCGGGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAATACCCTGTCTGTCAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504
  micA Streptococcus pneumoniae Cp1015

35.043

100

0.363

Multiple sequence alignment