Detailed information NTG1010531

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRA92_RS02695
• Genome accession: NZ_CP158305
• Coordinates: 550289..551290 (+)
• Length: 333 a.a.
• NCBI ID: WP_350225696.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP93
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 545289..556290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRA92_RS02660	ftsB	545297..545578 (+)	282	WP_005455577.1	cell division protein FtsB	-
ABRA92_RS02665	ispD	545580..546284 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRA92_RS02670	ispF	546302..546778 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRA92_RS02675	truD	546825..547868 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
ABRA92_RS02680	surE	547868..548644 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
ABRA92_RS02685	-	548644..549270 (+)	627	WP_053301516.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABRA92_RS02690	-	549285..550208 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABRA92_RS02695	rpoS	550289..551290 (+)	1002	WP_350225696.1	RNA polymerase sigma factor RpoS	Regulator
ABRA92_RS02700	mutS	551370..553931 (-)	2562	WP_015297264.1	DNA mismatch repair protein MutS	-
ABRA92_RS02705	pncC	554016..554498 (+)	483	WP_015297263.1	nicotinamide-nucleotide amidase	-
ABRA92_RS02710	recA	554699..555742 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 38012.93 Da
• Isoelectric Point: 4.5784

>NTDB_id=1010531 ABRA92_RS02695 WP_350225696.1 550289..551290(+) (rpoS) [Vibrio parahaemolyticus strain VP93]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNPRGLALLDLIELIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPD
ANNSDPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQ
GLNMENLFNVEDD

Nucleotide

• Length: 1002 bp

>NTDB_id=1010531 ABRA92_RS02695 WP_350225696.1 550289..551290(+) (rpoS) [Vibrio parahaemolyticus strain VP93]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCCCCGTGGCCTAGCGCTACTCGATCTTATTGAACTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAAT
TCGATCCAGAAAGAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAAC
CAAACTCGCACCATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCA
AAAGCTCGATCATGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGC
GTCTTAACGAGCGTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGAC
GCAAATAACTCTGATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAA
TCCAAAACAAAAAGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAG
AGATTGGTCTTACCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAA
GGCCTAAATATGGAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (90-163)

• Sigma-70 region 3 (Sigma70_r3) (174-247)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.84	100	0.841