Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABOD76_RS14705 Genome accession   NZ_CP158299
Coordinates   1917207..1918427 (-) Length   406 a.a.
NCBI ID   WP_350242716.1    Uniprot ID   A0AAU7U7V2
Organism   Deinococcus sonorensis KR-87     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1912207..1923427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS14680 (ABOD76_14630) - 1912502..1913101 (-) 600 WP_350242711.1 c-type cytochrome -
  ABOD76_RS14685 (ABOD76_14635) - 1913177..1913773 (-) 597 WP_350242712.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  ABOD76_RS14690 (ABOD76_14640) - 1913840..1914919 (-) 1080 WP_350242713.1 peptidylprolyl isomerase -
  ABOD76_RS14695 (ABOD76_14645) - 1915017..1916072 (+) 1056 WP_350242714.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  ABOD76_RS14700 (ABOD76_14650) - 1916085..1916840 (+) 756 WP_350242715.1 shikimate dehydrogenase -
  ABOD76_RS14705 (ABOD76_14655) pilC 1917207..1918427 (-) 1221 WP_350242716.1 type II secretion system F family protein Machinery gene
  ABOD76_RS14710 (ABOD76_14660) - 1918493..1919095 (+) 603 WP_350242717.1 L-threonylcarbamoyladenylate synthase -
  ABOD76_RS14715 (ABOD76_14665) scpB 1919095..1919652 (+) 558 WP_350242718.1 SMC-Scp complex subunit ScpB -
  ABOD76_RS14720 (ABOD76_14670) - 1919798..1920556 (+) 759 WP_350242719.1 DUF4388 domain-containing protein -
  ABOD76_RS14725 (ABOD76_14675) - 1920590..1921558 (+) 969 WP_350242720.1 Gfo/Idh/MocA family oxidoreductase -
  ABOD76_RS14730 (ABOD76_14680) - 1921560..1922618 (+) 1059 WP_350242721.1 aminopeptidase -
  ABOD76_RS14735 (ABOD76_14685) - 1922611..1922922 (+) 312 WP_350242722.1 non-heme iron oxygenase ferredoxin subunit -
  ABOD76_RS14740 (ABOD76_14690) - 1922926..1923216 (-) 291 WP_350242723.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43930.92 Da        Isoelectric Point: 9.7009

>NTDB_id=1010490 ABOD76_RS14705 WP_350242716.1 1917207..1918427(-) (pilC) [Deinococcus sonorensis KR-87]
MAVFEYRVRDRSGKIMSSQLEADSLAAVRDNLRSKGLMIVEIKAAKTGLNADIKIPFLSDRPPGLKQVAIFSKQMATLIN
AGVPLVQSLSIMQRQLEDKSFQTVLKAVRTDVESGTPLSEAIAKHPKVFSRLYINLIRAGETSGTLDAIMERISDFQEKE
LALKGKLKSALTYPVIVLVFAVAITYFLLTTIVPQFGGILTQLGAPLPLITRGLMATADFLQHKSWVIVLVVAAVVVAYR
QYYKTPKGRLIIDTLKLRLPVMGALLKRSAIASFTRTFGLLLASGVNIIESLEITKGTADNAVIENAIENARNVVMVGEQ
MSGSLAASNIFPPMVVSMVSIGEETGGLDTMLGKVADFYEREVDEAVEGLTAAIEPVMIVFLGAIVGLIVAGMFLPMFAI
IGQLSK

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1010490 ABOD76_RS14705 WP_350242716.1 1917207..1918427(-) (pilC) [Deinococcus sonorensis KR-87]
ATGGCCGTGTTTGAATATCGCGTTCGGGACCGCAGCGGGAAAATCATGAGCTCGCAGCTGGAGGCCGACAGTCTGGCTGC
GGTGCGCGACAACCTGCGCTCCAAGGGCCTGATGATCGTCGAGATCAAGGCGGCCAAGACCGGCCTGAATGCCGACATCA
AGATTCCGTTCCTCTCGGACCGCCCGCCGGGCCTCAAGCAGGTGGCGATCTTCTCGAAGCAGATGGCCACCCTGATCAAC
GCGGGTGTGCCGCTGGTCCAGTCGCTGTCCATCATGCAGCGCCAGCTGGAGGACAAGAGCTTCCAGACGGTGCTCAAGGC
TGTCCGCACTGACGTGGAGTCCGGCACGCCGCTGTCGGAGGCCATCGCCAAGCACCCCAAGGTGTTCTCCCGGCTGTACA
TCAACCTGATCCGTGCCGGCGAGACCTCCGGCACGCTTGACGCGATCATGGAACGCATTAGCGATTTCCAGGAGAAGGAA
CTGGCGCTCAAGGGCAAGCTCAAGAGCGCCCTGACCTACCCGGTCATCGTGCTGGTGTTCGCTGTCGCCATCACCTACTT
CCTGCTCACCACCATCGTGCCGCAGTTCGGCGGCATCCTGACCCAGCTGGGCGCGCCGCTGCCGTTGATCACGCGCGGCC
TGATGGCCACCGCCGACTTCCTGCAGCACAAGAGCTGGGTCATCGTGCTGGTGGTGGCGGCCGTGGTAGTGGCCTACCGG
CAGTACTACAAGACCCCCAAGGGCCGCCTGATCATCGACACCCTCAAGCTGCGGCTGCCGGTGATGGGCGCGCTGCTCAA
GCGCAGCGCCATCGCGTCGTTCACCCGCACCTTCGGCCTGCTGCTCGCCAGCGGCGTGAACATCATCGAGAGCCTGGAAA
TCACCAAGGGCACTGCCGACAACGCCGTGATCGAAAACGCCATTGAGAATGCCCGCAACGTGGTGATGGTGGGCGAGCAG
ATGAGCGGATCGCTGGCCGCCAGCAACATCTTCCCGCCGATGGTGGTCTCCATGGTCTCGATCGGTGAGGAAACCGGTGG
CCTGGACACCATGCTCGGCAAGGTCGCCGACTTCTACGAGCGCGAGGTGGACGAAGCCGTCGAGGGCCTCACGGCCGCCA
TTGAGCCGGTAATGATCGTGTTCCTGGGCGCCATCGTGGGCCTGATCGTGGCGGGCATGTTCCTGCCGATGTTCGCGATC
ATCGGTCAGCTCAGCAAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

57.882

100

0.579
  pilC Acinetobacter baylyi ADP1

36.842

98.276

0.362

Multiple sequence alignment