Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQ280_RS10590 Genome accession   NZ_CP158284
Coordinates   2128995..2129390 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2123995..2134390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ280_RS10565 (ABQ280_10565) thiE 2124456..2125097 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  ABQ280_RS10570 (ABQ280_10570) thiM 2125099..2125890 (-) 792 WP_042727552.1 hydroxyethylthiazole kinase -
  ABQ280_RS10575 (ABQ280_10575) thiD 2125874..2126704 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABQ280_RS10580 (ABQ280_10580) tenA 2126697..2127386 (-) 690 WP_000396074.1 thiaminase II -
  ABQ280_RS10585 (ABQ280_10585) sceD 2127911..2128606 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  ABQ280_RS10590 (ABQ280_10590) ssb 2128995..2129390 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ABQ280_RS10595 (ABQ280_10595) - 2129584..2130024 (+) 441 WP_000846746.1 YwpF-like family protein -
  ABQ280_RS10600 (ABQ280_10600) fabZ 2130083..2130523 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABQ280_RS10605 (ABQ280_10605) murA 2130557..2131822 (-) 1266 WP_042727551.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABQ280_RS10610 (ABQ280_10610) - 2131933..2132166 (-) 234 WP_000384523.1 DUF1146 family protein -
  ABQ280_RS10615 (ABQ280_10615) - 2132298..2132390 (-) 93 WP_001790611.1 hypothetical protein -
  ABQ280_RS10620 (ABQ280_10620) - 2132729..2133133 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1010427 ABQ280_RS10590 WP_000932694.1 2128995..2129390(-) (ssb) [Staphylococcus aureus strain ATCC 6538]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1010427 ABQ280_RS10590 WP_000932694.1 2128995..2129390(-) (ssb) [Staphylococcus aureus strain ATCC 6538]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment