Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ABQ280_RS02570 Genome accession   NZ_CP158284
Coordinates   541884..542453 (+) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 536884..547453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ280_RS02545 (ABQ280_02545) cysE 538097..538744 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ABQ280_RS02550 (ABQ280_02550) cysS 538728..540128 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  ABQ280_RS02555 (ABQ280_02555) - 540121..540525 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ABQ280_RS02560 (ABQ280_02560) rlmB 540533..541279 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABQ280_RS02565 (ABQ280_02565) - 541279..541803 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ABQ280_RS02570 (ABQ280_02570) sigH 541884..542453 (+) 570 WP_000872874.1 RNA polymerase sigma factor Regulator
  ABQ280_RS02575 (ABQ280_02575) rpmG 542568..542711 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ABQ280_RS02580 (ABQ280_02580) secE 542767..542949 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ABQ280_RS02585 (ABQ280_02585) nusG 542962..543510 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ABQ280_RS02590 (ABQ280_02590) rplK 543691..544113 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ABQ280_RS02595 (ABQ280_02595) rplA 544321..545013 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ABQ280_RS02600 (ABQ280_02600) rplJ 545285..545785 (+) 501 WP_042727573.1 50S ribosomal protein L10 -
  ABQ280_RS02605 (ABQ280_02605) rplL 545828..546196 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ABQ280_RS02610 (ABQ280_02610) - 546371..546979 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1010395 ABQ280_RS02570 WP_000872874.1 541884..542453(+) (sigH) [Staphylococcus aureus strain ATCC 6538]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1010395 ABQ280_RS02570 WP_000872874.1 541884..542453(+) (sigH) [Staphylococcus aureus strain ATCC 6538]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment