Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   T303_RS00235 Genome accession   NZ_CP006819
Coordinates   37025..37342 (-) Length   105 a.a.
NCBI ID   WP_011681685.1    Uniprot ID   -
Organism   Streptococcus thermophilus ASCC 1275     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32025..42342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T303_RS00200 (T303_00200) - 32383..33045 (-) 663 WP_011681679.1 type II CAAX endopeptidase family protein -
  T303_RS00205 (T303_00205) - 33142..33585 (-) 444 WP_011681680.1 hypothetical protein -
  T303_RS11280 (T303_00210) - 33659..33997 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  T303_RS11285 - 34041..34316 (-) 276 WP_011681681.1 hypothetical protein -
  T303_RS00220 (T303_00215) - 34328..34526 (-) 199 Protein_41 helix-turn-helix transcriptional regulator -
  T303_RS00225 (T303_00220) - 34775..35968 (-) 1194 WP_014608740.1 acetate kinase -
  T303_RS00230 (T303_00225) comGH 36024..36980 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  T303_RS00235 (T303_00230) comGG 37025..37342 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  T303_RS00240 (T303_00235) comGF 37320..37757 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  T303_RS00245 (T303_00240) comGE 37741..38034 (-) 294 WP_024704238.1 competence type IV pilus minor pilin ComGE Machinery gene
  T303_RS00250 (T303_00245) comGD 38006..38434 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  T303_RS00255 (T303_00250) comGC 38394..38720 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  T303_RS00260 (T303_00255) comGB 38717..39817 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  T303_RS00265 (T303_00260) comGA/cglA/cilD 39699..40640 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  T303_RS00270 (T303_00265) - 40721..41083 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11851.01 Da        Isoelectric Point: 10.6334

>NTDB_id=101035 T303_RS00235 WP_011681685.1 37025..37342(-) (comGG) [Streptococcus thermophilus ASCC 1275]
MLLKKQVRGGVLLYALFMAGIFILLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVVSKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=101035 T303_RS00235 WP_011681685.1 37025..37342(-) (comGG) [Streptococcus thermophilus ASCC 1275]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTATACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGTCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371
  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362