Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABOA58_RS17865 Genome accession   NZ_CP158190
Coordinates   3655439..3657154 (-) Length   571 a.a.
NCBI ID   WP_350299441.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LSJ146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3650439..3662154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOA58_RS17850 (ABOA58_17805) - 3650920..3652509 (-) 1590 WP_350299440.1 FapA family protein -
  ABOA58_RS17855 (ABOA58_17810) spo0A 3652863..3653654 (-) 792 WP_137016177.1 sporulation transcription factor Spo0A -
  ABOA58_RS17860 (ABOA58_17815) spoIVB 3653984..3655276 (-) 1293 WP_137016179.1 SpoIVB peptidase -
  ABOA58_RS17865 (ABOA58_17820) recN 3655439..3657154 (-) 1716 WP_350299441.1 DNA repair protein RecN Machinery gene
  ABOA58_RS17870 (ABOA58_17825) argR 3657177..3657626 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  ABOA58_RS17875 (ABOA58_17830) - 3657952..3658779 (-) 828 WP_350299442.1 TlyA family RNA methyltransferase -
  ABOA58_RS17880 (ABOA58_17835) dxs 3658784..3660676 (-) 1893 WP_101223461.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABOA58_RS17885 (ABOA58_17840) - 3660927..3661820 (-) 894 WP_350299443.1 polyprenyl synthetase family protein -
  ABOA58_RS17890 (ABOA58_17845) - 3661822..3662055 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64474.35 Da        Isoelectric Point: 5.2172

>NTDB_id=1010229 ABOA58_RS17865 WP_350299441.1 3655439..3657154(-) (recN) [Peribacillus frigoritolerans strain LSJ146]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNALSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQNFAQQLTKKIHKELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKVKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1010229 ABOA58_RS17865 WP_350299441.1 3655439..3657154(-) (recN) [Peribacillus frigoritolerans strain LSJ146]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCGATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCTAAGGCCGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGACATCTCACAAAGTGGCAAAAGCGTTTG
CAGGGTAAATGGGAAGCTTGTAACGATTTCCACTTTACGCGAGATAGGCCGGACATTGATAGATATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCACTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGCCTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAGTTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATTCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAGGGTTTAAAGAA
TAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCAAACATCCGAGACCAATTAGATTCTTTGG
ATTATGATACAGAGCGTGTGGAATTCATTGAAAGCCGCCTTAATGAAATAAATCAATTAAAGCGAAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGAGCCGCTATAGAAGAAGAAGTCGAAAAACTGCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATTAAGGCAGATTTAATTGTCGAAGCAAAGAATCTTTCTGAACTTCGCCAGAACTTCG
CTCAGCAGTTAACCAAAAAGATCCATAAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACACTTCCTT
CAAACTGCTTATACTTTCGATGAATTGTCAGATAGGGGCATTAATCAATCAGGCCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCCAAAATCGCATCTGGCGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAACATCAAGGCATAACATCCATTATATTTGATGAAGTGGACACAGGTGTGAGCGGAAGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCCGC
TATGGCGGATACCCACCTTTTCATAGCAAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGTTAATTGAAA
CGGAAAAAGTAAAAGAAATCGGCAGGATGATTTCAGGAGTCGAGATTACGGATTTGACGAAGCAGCATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615

Multiple sequence alignment