Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H1X08_RS03560 Genome accession   NZ_LR822025
Coordinates   709906..710586 (+) Length   226 a.a.
NCBI ID   WP_164178184.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 704906..715586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS03545 (STHERMO_0789) - 706126..707475 (-) 1350 WP_180482550.1 MATE family efflux transporter -
  H1X08_RS03550 (STHERMO_0791) - 707603..708873 (-) 1271 Protein_671 nucleobase:cation symporter-2 family protein -
  H1X08_RS03555 (STHERMO_0792) - 708873..709454 (-) 582 Protein_672 xanthine phosphoribosyltransferase -
  H1X08_RS03560 (STHERMO_0793) braR 709906..710586 (+) 681 WP_164178184.1 response regulator transcription factor Regulator
  H1X08_RS03565 (STHERMO_0794) - 710576..711550 (+) 975 WP_415669297.1 sensor histidine kinase -
  H1X08_RS03570 (STHERMO_0795) - 711695..712453 (+) 759 WP_180482551.1 ABC transporter ATP-binding protein -
  H1X08_RS03575 (STHERMO_0796) - 712455..714455 (+) 2001 WP_180482552.1 ABC transporter permease -
  H1X08_RS03580 (STHERMO_0797) - 714540..714737 (+) 198 Protein_677 YkgJ family cysteine cluster protein -
  H1X08_RS03585 (STHERMO_0798) - 714739..714918 (+) 180 Protein_678 ABC transporter permease -
  H1X08_RS03590 (STHERMO_0799) - 714929..715378 (+) 450 WP_180482554.1 cytidine deaminase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26114.48 Da        Isoelectric Point: 5.0048

>NTDB_id=1010171 H1X08_RS03560 WP_164178184.1 709906..710586(+) (braR) [Streptococcus thermophilus isolate STH_CIRM_961]
MHKILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKVEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQNLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFEHAGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1010171 H1X08_RS03560 WP_164178184.1 709906..710586(+) (braR) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGCATAAGATTTTATTAGTGGAGGACGACGAGGTTATCCGTCAACAAGTCAAAAAAATGCTAGAACAGTGGGGTTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTATTTTTGTAAAAGTAGAGCCCCACTTGGTTCTTATGGACATTG
GTTTACCTCTATTTAATGGTTATCATTGGTGTCAGGAAATTCGTAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAATCTTTTGGAATATATGGGTG
TGATTTTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACCAAGAACGAGTTTCAGATTTTA
CAAGTTCTCTTCGAACATGCTGGTAATATCGTTAGTCGGGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAATACCCTGTCTGTCAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

52.294

96.46

0.504
  micA Streptococcus pneumoniae Cp1015

35.043

100

0.363