Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABN702_RS20330 Genome accession   NZ_CP158164
Coordinates   3986683..3987804 (-) Length   373 a.a.
NCBI ID   WP_417898428.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3981683..3992804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS20315 (ABN702_20275) gyrA 3981805..3984294 (-) 2490 WP_417898426.1 DNA gyrase subunit A -
  ABN702_RS20320 (ABN702_20280) gyrB 3984414..3986339 (-) 1926 WP_417900986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABN702_RS20325 (ABN702_20285) remB 3986418..3986672 (-) 255 WP_417898427.1 extracellular matrix regulator RemB -
  ABN702_RS20330 (ABN702_20290) recF 3986683..3987804 (-) 1122 WP_417898428.1 DNA replication/repair protein RecF Machinery gene
  ABN702_RS20335 (ABN702_20295) yaaA 3987819..3988037 (-) 219 WP_417898429.1 S4 domain-containing protein YaaA -
  ABN702_RS20340 (ABN702_20300) dnaN 3988144..3989280 (-) 1137 WP_417898430.1 DNA polymerase III subunit beta -
  ABN702_RS20345 (ABN702_20305) dnaA 3989466..3990812 (-) 1347 WP_386644823.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 42862.26 Da        Isoelectric Point: 8.8316

>NTDB_id=1010053 ABN702_RS20330 WP_417898428.1 3986683..3987804(-) (recF) [Bacillus sp. CSS-39]
MYIEELSLRHYRNYQSLEAVFENGVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDLISWDEEYAKIEGRIHKRNGP
LPLQLVISKKGKKAKSNHLEQSKLSQYIGNMNIVMFAPEDLTLVKGSPQVRRRFIDMELGQVSPIYMHDLARYQKVLQQR
NHYLKQLQTRKQKDETMLFVLTEQMVELAAKVTIKRLEFIQLLQKWAQPIHSSISRGLEELTIIYKPSIDHVSESLNLSK
MIEAYNEKFDKIKDREIERGVTLFGPHRDDLIFHVNGKEVQTFGSQGQQRTTALSLKLAEIDLIYSVVGEYPILLLDDVL
SELDDYRQSHLLNTIQGKVQTFVTTTSVDGIDHKTLKQAATYEVVSGSLKKLN

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=1010053 ABN702_RS20330 WP_417898428.1 3986683..3987804(-) (recF) [Bacillus sp. CSS-39]
TTGTATATTGAAGAGTTGTCCTTAAGACACTATCGCAATTATCAAAGCTTGGAAGCTGTGTTCGAGAATGGTGTGAATGT
AATTCTGGGAGAGAATGCCCAAGGAAAGACAAACGTAATGGAATCCATCTATGTACTGGCCATGGCAAAGTCGCATCGTA
CCTCCAACGATAAAGATCTTATCAGTTGGGATGAAGAGTATGCTAAAATAGAAGGCAGGATACATAAAAGAAATGGACCG
TTACCATTACAGCTTGTCATTTCCAAAAAAGGGAAAAAGGCAAAGAGCAATCATCTGGAACAATCGAAACTGAGTCAATA
TATCGGGAATATGAATATTGTCATGTTTGCGCCTGAGGATCTGACCCTTGTAAAAGGGAGTCCACAGGTAAGACGCCGGT
TCATCGATATGGAGCTCGGCCAGGTCTCCCCTATCTATATGCATGATCTGGCACGCTATCAAAAGGTTTTGCAGCAGAGA
AACCATTATTTGAAGCAGCTGCAAACCAGAAAGCAAAAAGATGAGACCATGCTTTTTGTTTTGACGGAACAGATGGTGGA
GCTTGCAGCGAAAGTGACGATCAAGCGTCTGGAGTTTATTCAGTTACTGCAAAAATGGGCACAGCCAATACATAGCAGCA
TCAGCAGAGGGTTGGAGGAATTGACTATTATTTACAAACCCTCTATTGATCATGTATCAGAAAGCTTAAATTTGTCGAAA
ATGATAGAAGCATATAACGAAAAATTTGATAAAATAAAAGATAGAGAAATTGAAAGAGGCGTCACGTTGTTTGGACCACA
TCGGGATGACCTGATCTTTCATGTGAACGGAAAAGAAGTGCAGACTTTCGGGTCGCAAGGACAACAACGGACAACAGCCC
TTTCTTTAAAGTTGGCAGAAATAGACCTCATCTATTCCGTAGTGGGGGAATATCCTATTCTATTGTTGGATGATGTGTTA
TCAGAATTAGATGATTATAGACAATCCCACTTGTTGAACACGATCCAGGGAAAAGTGCAGACCTTCGTCACAACGACAAG
TGTGGATGGAATAGACCATAAAACACTGAAACAAGCAGCAACCTATGAGGTAGTCTCTGGTTCTTTAAAGAAATTGAACT
GA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

72.237

99.464

0.718

Multiple sequence alignment