Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABN702_RS19770 Genome accession   NZ_CP158164
Coordinates   3875047..3876423 (-) Length   458 a.a.
NCBI ID   WP_204420071.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3870047..3881423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS19750 (ABN702_19710) ispF 3871485..3871961 (-) 477 WP_417898370.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABN702_RS19755 (ABN702_19715) ispD 3871984..3872673 (-) 690 WP_417898371.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABN702_RS19760 (ABN702_19720) - 3872756..3873847 (-) 1092 WP_417898372.1 PIN/TRAM domain-containing protein -
  ABN702_RS19765 (ABN702_19725) disA 3873971..3875044 (-) 1074 WP_386645328.1 DNA integrity scanning diadenylate cyclase DisA -
  ABN702_RS19770 (ABN702_19730) radA 3875047..3876423 (-) 1377 WP_204420071.1 DNA repair protein RadA Machinery gene
  ABN702_RS19775 (ABN702_19735) clpC 3876603..3879041 (-) 2439 WP_417898373.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  ABN702_RS19780 (ABN702_19740) - 3879064..3880128 (-) 1065 WP_417898374.1 protein arginine kinase -
  ABN702_RS19785 (ABN702_19745) - 3880129..3880677 (-) 549 WP_417898375.1 UvrB/UvrC motif-containing protein -
  ABN702_RS19790 (ABN702_19750) - 3880691..3881152 (-) 462 WP_417898376.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49948.66 Da        Isoelectric Point: 7.8683

>NTDB_id=1010049 ABN702_RS19770 WP_204420071.1 3875047..3876423(-) (radA) [Bacillus sp. CSS-39]
MAKRKTKFICQECGYESAKWMGKCPGCGTWNKMTEEMEESKTPRRGGFTTSSPTLVRKAESITKVETIKEARIQTDMAEC
NRVLGGGLVQGSLVLIGGDPGIGKSTLLLQVCCQLAVKKHRVLYISGEESVQQTKLRADRLGVQADELFVLSETDFELIG
KAIDDVQPTLLVIDSIQTVYHPAVTSAPGSVSQVRECTAELMRIAKTKNIAVFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIGIFEMKEEGLEEVKNPSEIFLEERSKGAAGSTVVASMEGTRPVLVEIQALISPTGY
GNPRRMATGIDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRNQASEPTDVVIGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRVIIPSKNLGGWTVPKEVNVIGVATIDQALQYVLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1010049 ABN702_RS19770 WP_204420071.1 3875047..3876423(-) (radA) [Bacillus sp. CSS-39]
ATGGCAAAACGTAAGACGAAATTTATTTGTCAGGAATGTGGATATGAATCTGCCAAATGGATGGGGAAGTGTCCTGGTTG
TGGTACATGGAATAAAATGACCGAGGAAATGGAAGAATCCAAAACTCCAAGAAGAGGCGGGTTTACAACATCCTCCCCGA
CACTTGTGAGAAAAGCGGAATCCATTACAAAAGTGGAGACTATAAAGGAAGCACGGATCCAAACTGATATGGCGGAATGC
AACCGGGTACTTGGCGGTGGCTTGGTGCAAGGTTCACTCGTACTGATCGGGGGAGATCCCGGTATTGGGAAGTCGACACT
CTTGCTGCAGGTGTGCTGTCAGCTTGCTGTGAAAAAGCATCGAGTGCTCTATATTTCCGGAGAAGAATCCGTACAGCAGA
CGAAGCTTCGAGCGGATCGCTTGGGCGTGCAGGCGGATGAATTGTTTGTATTATCGGAGACCGATTTTGAGTTGATCGGA
AAAGCGATAGATGATGTTCAGCCGACGCTCCTTGTCATTGATTCCATTCAGACGGTCTATCATCCCGCTGTCACCTCTGC
ACCGGGTAGTGTGTCACAGGTAAGAGAGTGTACGGCAGAGCTGATGAGGATCGCCAAAACCAAGAATATCGCGGTATTCA
TTGTAGGGCATGTAACGAAGGAAGGCTCCATTGCCGGCCCACGTTTGTTGGAGCATATGGTAGATACTGTGTTATATTTT
GAGGGAGAGCGTCATCATACATATCGTATTTTGCGATCTGTTAAAAATAGATTTGGTTCGACAAATGAGATTGGCATTTT
TGAAATGAAGGAGGAAGGGTTGGAGGAAGTGAAAAACCCTTCTGAGATCTTTCTCGAAGAGCGCTCCAAGGGGGCTGCCG
GATCAACGGTTGTAGCCTCCATGGAGGGAACACGGCCCGTGCTGGTGGAAATACAAGCCCTGATCTCTCCGACAGGTTAC
GGAAATCCGAGAAGGATGGCCACTGGTATCGATCATAATCGCGTGTCGCTGATCATGGCCGTATTGGAAAAAAGGGTAGG
CCTACTTCTGCAAAACCAGGATGCATATTTGAAGGTTGCTGGTGGAGTGAAACTGGACGAACCGGCTATCGATTTGGCTG
TTGCTGTAAGTATTGCATCAAGCTTCCGCAACCAAGCGTCAGAACCTACTGATGTGGTGATTGGGGAAGTGGGACTGACC
GGGGAAATCAGGCGGGTCTCCCGAATCGAACAACGGGTGCAGGAGGCTGCAAAACTTGGGTTTAAGCGTGTCATTATCCC
TTCCAAGAATCTTGGTGGGTGGACCGTTCCGAAAGAGGTCAATGTTATCGGCGTTGCCACCATTGACCAAGCGCTGCAAT
ATGTTTTAGGAGGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.728

100

0.749
  radA Streptococcus pneumoniae Rx1

61.707

99.782

0.616
  radA Streptococcus pneumoniae D39

61.707

99.782

0.616
  radA Streptococcus pneumoniae R6

61.707

99.782

0.616
  radA Streptococcus pneumoniae TIGR4

61.707

99.782

0.616
  radA Streptococcus mitis NCTC 12261

61.707

99.782

0.616
  radA Streptococcus mitis SK321

61.488

99.782

0.614

Multiple sequence alignment