Detailed information NTG1009984

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BIKONL_RS02480
• Genome accession: NZ_CP158159
• Coordinates: 553154..554020 (+)
• Length: 288 a.a.
• NCBI ID: WP_350298322.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain CRA-04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 548154..559020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BIKONL_RS02460 (BIKONL_000496)	-	549685..551007 (-)	1323	WP_350298320.1	integrase arm-type DNA-binding domain-containing protein	-
BIKONL_RS02470 (BIKONL_000498)	-	551316..551726 (-)	411	WP_012051131.1	pilin	-
BIKONL_RS02475 (BIKONL_000499)	-	551943..553151 (+)	1209	WP_350298321.1	type II secretion system F family protein	-
BIKONL_RS02480 (BIKONL_000500)	pilD	553154..554020 (+)	867	WP_350298322.1	A24 family peptidase	Machinery gene
BIKONL_RS02485 (BIKONL_000501)	coaE	554020..554643 (+)	624	WP_004575721.1	dephospho-CoA kinase	-
BIKONL_RS02490 (BIKONL_000502)	yacG	554640..554840 (+)	201	WP_003247540.1	DNA gyrase inhibitor YacG	-
BIKONL_RS02495 (BIKONL_000503)	-	555028..555735 (-)	708	WP_014589599.1	energy-coupling factor ABC transporter permease	-
BIKONL_RS02500 (BIKONL_000504)	-	555822..556253 (+)	432	WP_350298323.1	hypothetical protein	-
BIKONL_RS02505 (BIKONL_000505)	-	556309..556938 (+)	630	WP_003247546.1	DUF1780 domain-containing protein	-
BIKONL_RS02510 (BIKONL_000506)	-	557071..557244 (+)	174	WP_008091951.1	DUF3094 domain-containing protein	-
BIKONL_RS02515 (BIKONL_000507)	-	557329..558624 (+)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31836.91 Da
• Isoelectric Point: 7.5986

>NTDB_id=1009984 BIKONL_RS02480 WP_350298322.1 553154..554020(+) (pilD) [Pseudomonas putida strain CRA-04]
MTLWALLAEQPAYLLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHPRFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LFGLCLLRFRRDAMGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1009984 BIKONL_RS02480 WP_350298322.1 553154..554020(+) (pilD) [Pseudomonas putida strain CRA-04]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATCTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTCATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACCCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCAGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.768	94.097	0.497
pilD	Acinetobacter baumannii D1279779	50.752	92.361	0.469
pilD	Vibrio campbellii strain DS40M4	48.913	95.833	0.469
pilD	Acinetobacter nosocomialis M2	50	92.361	0.462
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451