Detailed information NTG0100994

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: P303_RS03030
• Genome accession: NZ_CP006740
• Coordinates: 657820..660096 (+)
• Length: 758 a.a.
• NCBI ID: WP_038229838.1
• Uniprot ID: -
• Organism: Xylella fastidiosa MUL0034
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 652820..665096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P303_RS03000 (P303_03215)	-	653306..654088 (+)	783	WP_004089159.1	DsbA family protein	-
P303_RS03005 (P303_03220)	-	654104..654874 (+)	771	WP_012382517.1	endonuclease/exonuclease/phosphatase family protein	-
P303_RS03010 (P303_03225)	hflD	654982..655596 (-)	615	WP_038229834.1	high frequency lysogenization protein HflD	-
P303_RS03015 (P303_03230)	mnmA	655593..656732 (-)	1140	WP_038229836.1	tRNA 2-thiouridine(34) synthase MnmA	-
P303_RS03020 (P303_03235)	-	656729..657187 (-)	459	WP_004083752.1	NUDIX hydrolase	-
P303_RS03025 (P303_03240)	clpS	657367..657687 (+)	321	WP_004083751.1	ATP-dependent Clp protease adapter ClpS	-
P303_RS03030 (P303_03250)	clpC	657820..660096 (+)	2277	WP_038229838.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
P303_RS03035 (P303_03255)	infA	660445..660663 (-)	219	WP_004083749.1	translation initiation factor IF-1	-
P303_RS03040 (P303_03260)	aat	660780..661511 (-)	732	WP_004089137.1	leucyl/phenylalanyl-tRNA--protein transferase	-
P303_RS03045 (P303_03265)	-	661523..662659 (-)	1137	WP_173391715.1	GNAT family N-acetyltransferase	-
P303_RS03050 (P303_03270)	trxB	663087..664052 (-)	966	WP_004083746.1	thioredoxin-disulfide reductase	-

Sequence

Protein

• Length: 758 a.a.
• Molecular weight: 83888.38 Da
• Isoelectric Point: 6.4368

>NTDB_id=100994 P303_RS03030 WP_038229838.1 657820..660096(+) (clpC) [Xylella fastidiosa MUL0034]
MFSKDLEQTIGQCYKRTREACHEFMTVEHLLLSLLDNPLAHAVLKACGADVTRLKRDLEQAIEVSITRLDADDGRDTQPT
LGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYFLNQRDISRLDIVNYLSHGITRMGEESDIGQAAENEAKG
ESEANKGDALAEYAINLNEHARNGRIDPLVGRKDEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLAKRIVDRSVPEV
LADAVIYSLDLGALVAGTKYRGDFEKRLKGVLSALRKTPNVVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCI
GSTTFQEYRGIFEKDRALARRFQKIDIVEPTAGEAFEILQGLKPKYEAHHGVTYADDALRVAVDLSVKHIGDRLLPDKAI
DVIDEAGARQRLLPEKERKELIDIEEIETIVTKMARVPAKQVSVSDKDVLKHLERNLKMVIFGQEPAIEMLSSAIKLARS
GLGNPDKPIGNFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSEYMEPHSVSRLIGAPPGYVGFDQGGLLTEKIVKTPHC
VLLLDEVEKAHMDVFNILLQVMDRGVLTDTNGREASFKNVILVMTTNAGASQSSRRTIGFTKQDHTSDAMEVICRSFSPE
FRNRLDAIVQFQPLGFSHILRVVDKFIIELEMLLQEKRVVLSATPIARDWLAQHGFDPLMGARPMARVIQEKIKRPLADE
LLFGKLLNGGRVGIDVRDNELIVETYSEPELLFPATVE

Nucleotide

• Length: 2277 bp

>NTDB_id=100994 P303_RS03030 WP_038229838.1 657820..660096(+) (clpC) [Xylella fastidiosa MUL0034]
ATGTTCAGCAAAGATCTCGAGCAAACAATAGGCCAGTGCTACAAGCGAACGCGTGAGGCGTGTCATGAGTTCATGACCGT
TGAGCATCTGCTTCTTTCATTGTTGGACAATCCATTGGCGCACGCTGTACTGAAGGCTTGCGGAGCGGATGTTACCAGGC
TGAAGCGTGACCTTGAGCAGGCCATTGAGGTATCTATTACTCGCTTGGATGCCGATGACGGCCGTGATACTCAGCCGACG
CTTGGTTTCCAGCGAGTGCTGCAGCGTGCTGTTTACCATGTGCAGTCTTCTGGTAAGAAGGAGGTGACCGGCGCTAATGT
ACTGGTGGCTATCTTTGGTGAAAAGGATTCGCATGCCGTCTACTTTCTGAATCAGCGGGACATCAGCCGACTCGATATCG
TCAACTATTTATCCCACGGTATTACCCGTATGGGCGAGGAGAGTGACATCGGGCAAGCTGCTGAGAATGAGGCTAAGGGG
GAAAGTGAGGCGAATAAGGGGGATGCTCTTGCTGAATATGCTATTAACTTGAATGAACATGCACGGAATGGACGAATTGA
TCCATTGGTTGGGCGCAAAGATGAGATTGAACGTACGATCCAGGTGTTATGCCGACGTCGCAAGAATAACCCGCTCTATG
TAGGTGAAGCGGGCGTTGGTAAAACCGCAATCGCTGAGGGTTTGGCCAAGCGTATTGTTGATCGTAGTGTGCCGGAGGTG
CTTGCCGATGCGGTGATCTACTCGTTGGATCTTGGCGCTCTGGTGGCTGGTACCAAATATCGTGGTGACTTTGAAAAACG
TCTGAAGGGTGTGTTAAGTGCGTTGCGCAAAACCCCTAACGTAGTTTTGTTTATTGATGAAATCCATACCATCATCGGCG
CTGGTTCCGCTTCGGGTGGCACGATGGATGCGTCTAATTTGATCAAGCCAGCCTTGGCTTCAGGTGAGTTACGTTGCATT
GGTTCGACCACGTTTCAAGAGTATCGCGGCATCTTCGAAAAGGACCGTGCTTTGGCGAGGCGTTTTCAGAAGATCGATAT
CGTCGAGCCTACCGCGGGCGAGGCTTTCGAGATTCTACAAGGACTCAAGCCTAAGTATGAGGCACATCACGGCGTTACCT
ATGCAGATGACGCATTGCGCGTTGCGGTTGATTTATCGGTCAAGCACATCGGTGATCGGTTGTTGCCGGATAAGGCGATT
GATGTGATAGATGAGGCGGGCGCGCGTCAGCGCCTGTTGCCGGAGAAAGAACGCAAAGAGCTGATCGATATTGAGGAGAT
TGAGACCATTGTTACGAAGATGGCTAGGGTCCCGGCGAAGCAGGTGAGTGTGAGCGATAAGGACGTTTTGAAGCACCTCG
AACGCAATTTGAAGATGGTGATCTTTGGTCAGGAGCCAGCGATTGAGATGCTGTCGTCGGCAATTAAGTTGGCGCGCAGT
GGCCTAGGTAATCCGGATAAGCCGATTGGAAACTTCCTGCTTGCTGGCCCAACGGGGGTTGGTAAAACTGAGGTGACTAA
ACAATTAGCACACCATCTTGGGATCGAGTTGGTACGTTTTGACATGTCTGAGTACATGGAGCCGCATTCGGTGAGTCGTC
TGATTGGTGCGCCTCCGGGCTATGTTGGTTTTGATCAGGGAGGGTTGTTGACTGAGAAGATCGTCAAGACTCCACACTGC
GTTCTGCTGTTGGACGAGGTGGAGAAAGCGCATATGGATGTCTTCAATATTCTCCTACAGGTCATGGATCGCGGTGTGTT
AACGGATACCAATGGACGTGAGGCGAGTTTTAAAAATGTGATCCTGGTAATGACGACCAATGCAGGTGCGTCCCAATCTT
CACGGCGTACGATTGGTTTCACTAAGCAGGACCATACCAGTGATGCGATGGAAGTGATTTGTCGTAGCTTCAGCCCTGAG
TTCCGCAATCGTCTTGATGCAATTGTGCAGTTTCAGCCACTGGGTTTCAGTCACATTCTGCGGGTTGTCGACAAGTTCAT
CATTGAGTTGGAGATGTTACTTCAAGAGAAACGTGTTGTTTTGTCGGCTACGCCGATTGCTCGCGACTGGCTGGCTCAGC
ATGGTTTTGATCCGCTTATGGGTGCTCGTCCGATGGCACGTGTGATTCAAGAGAAAATCAAACGCCCACTTGCAGACGAA
TTGTTGTTTGGTAAGTTGCTCAACGGTGGTCGGGTAGGCATTGATGTGCGTGATAATGAGTTAATTGTTGAGACTTATTC
GGAACCAGAGCTGTTGTTTCCGGCGACCGTGGAGTAA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-62)

• AAA lid domain (AAA_lid_9) (353-454)

• ATPase family associated with various cellular activities (AAA) (AAA) (212-310)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-732)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-648)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.7	100	0.42
clpC	Streptococcus pneumoniae TIGR4	37.129	100	0.396
clpC	Streptococcus pneumoniae Rx1	37.129	100	0.396
clpC	Streptococcus pneumoniae D39	37.129	100	0.396
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	36.654	100	0.393
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	38.963	99.208	0.387