Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ABFV67_RS14185 Genome accession   NZ_CP158117
Coordinates   87676..89724 (-) Length   682 a.a.
NCBI ID   WP_306687211.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 82676..94724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS14160 (ABFV67_14155) phnR 82879..83598 (-) 720 WP_332397187.1 phosphonate utilization transcriptional regulator PhnR -
  ABFV67_RS14165 (ABFV67_14160) rnk 83839..84249 (+) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  ABFV67_RS14170 (ABFV67_14165) yjjG 84303..84977 (-) 675 WP_004396500.1 pyrimidine 5'-nucleotidase -
  ABFV67_RS14175 (ABFV67_14170) elbB 85072..85722 (+) 651 WP_161425397.1 isoprenoid biosynthesis glyoxalase ElbB -
  ABFV67_RS14180 (ABFV67_14175) cqsA 86315..87496 (+) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ABFV67_RS14185 (ABFV67_14180) cqsS 87676..89724 (-) 2049 WP_306687211.1 hybrid sensor histidine kinase/response regulator Regulator
  ABFV67_RS14190 (ABFV67_14185) - 89778..92822 (-) 3045 WP_350007126.1 SMC family ATPase -
  ABFV67_RS14195 (ABFV67_14190) - 92826..93968 (-) 1143 WP_306687213.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78674.44 Da        Isoelectric Point: 5.7691

>NTDB_id=1009842 ABFV67_RS14185 WP_306687211.1 87676..89724(-) (cqsS) [Vibrio metschnikovii strain IS021]
MDAVKKIYQYAEPNLTLVGWMGFIGFPIYYYVWTYLFPQGYESFWLRGFCSLLFAGIAFRHSFPKALQRYLPYYYLLSIG
FCLPFFFSFMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLPQAIISVLLAYFSVYVVVDAAPSQMISWTYVPIFIFTY
VFGNLFYFRNQVSHESKASLAKSFGAGIAHEMRNPLSALKSSLDVVRTLVPSPHSGQATHIINQQDLQQLHEILNDADEV
IHSGNETIDLLLTSIDQHRVSTSTFRKLSAATVVENAIHSFAYKRVVDRAAVSLTVNQDFDFFGSDTLLKFALYNLLKNA
FYYQSSEVFTINIELNRVDEQNVITVKDNGIGIEAEQLEEIFKDFYTFGKHNSYGLGLPFCRKVMHSFGGEIICHSVFGE
WTQFTLQFPDVESERIKQIKHDLLKSKSILLIGEPSLLSRHLNEQAFYLGFTLHMLTLSQAMQKEAYEFEFDLIFIDLAP
FETQWDKLSLLEGQLHFTEARISYIYDQSKRYPINISRYLTIYPIEIRHLLKDSIGTIEKLLFSIDELEVERGNIPQREV
NYQRSILLVDDNDSLRTFSAILLEKQGYDVYQAHDGQQALEILKQHTMDLILMDVEMPVIDGLQATNIIRSSMAEYRKTP
IIGYTGDNSSETINRLYRAGMNDYIVKPADKDKLLNKVADWL

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=1009842 ABFV67_RS14185 WP_306687211.1 87676..89724(-) (cqsS) [Vibrio metschnikovii strain IS021]
ATGGATGCGGTAAAAAAAATATACCAATACGCAGAACCAAACTTAACGTTAGTTGGATGGATGGGCTTCATCGGTTTTCC
GATTTACTATTATGTATGGACTTACCTGTTTCCTCAAGGCTATGAATCGTTTTGGCTACGGGGATTTTGCTCGCTATTGT
TTGCCGGAATTGCTTTTCGCCACTCATTTCCCAAAGCATTACAGCGCTATTTACCGTATTACTATCTGCTTTCAATAGGC
TTTTGTTTACCTTTTTTCTTCTCTTTTATGATGTTGATGAACGATTGGTCGACAGTCTGGGCGATGTCTTTTATGGCATC
GATTTTCTTGCATATTCTGCTAGTTCATGAAACTAAGGTGATGTTGCCACAAGCGATTATTTCCGTATTACTCGCTTACT
TCTCGGTTTATGTTGTCGTTGATGCCGCCCCTAGTCAGATGATTTCTTGGACTTATGTACCTATTTTTATCTTTACTTAT
GTATTCGGTAATCTGTTCTACTTTCGTAATCAGGTATCACACGAGAGCAAAGCATCATTAGCAAAATCGTTTGGTGCAGG
AATTGCACACGAAATGCGTAATCCACTCAGTGCGCTTAAGTCTTCTCTTGATGTGGTGCGTACTCTAGTTCCTTCCCCCC
ATTCAGGCCAAGCAACTCATATTATTAATCAACAAGATTTACAGCAATTGCATGAAATATTAAATGATGCGGATGAGGTG
ATTCATTCTGGTAATGAAACCATAGATTTATTGTTAACGTCAATTGATCAGCATCGTGTCTCAACGTCGACCTTTCGAAA
ATTATCCGCTGCTACGGTGGTTGAAAATGCTATTCATTCTTTTGCCTACAAACGGGTCGTCGATCGAGCAGCCGTTTCAT
TAACCGTTAATCAAGATTTTGATTTTTTTGGTAGCGATACCTTACTTAAGTTTGCGTTGTACAATTTATTGAAAAATGCT
TTTTATTATCAAAGTAGTGAAGTGTTTACGATTAACATCGAATTGAATCGAGTCGATGAGCAGAATGTGATTACTGTCAA
AGATAATGGGATTGGTATTGAAGCAGAACAGCTCGAAGAAATTTTTAAGGACTTCTATACCTTTGGTAAACATAATAGTT
ATGGGTTAGGGCTGCCTTTTTGTCGAAAAGTTATGCATTCATTTGGCGGTGAAATTATTTGCCATTCCGTCTTCGGTGAA
TGGACCCAATTTACCCTTCAGTTTCCAGATGTTGAATCCGAACGTATCAAACAGATAAAACACGATCTACTAAAATCTAA
ATCGATTTTATTGATTGGTGAACCGAGTTTATTAAGTCGGCATCTGAATGAACAAGCTTTTTATTTAGGGTTTACTTTGC
ATATGCTCACTCTCAGTCAAGCGATGCAAAAAGAAGCGTATGAATTTGAATTTGATCTTATTTTTATTGATTTAGCTCCA
TTTGAAACACAGTGGGATAAATTGAGCTTACTGGAAGGTCAATTACATTTTACTGAAGCCAGAATTAGTTATATTTATGA
CCAATCTAAGCGTTATCCTATTAATATCTCTCGTTACTTAACAATTTATCCAATTGAAATACGTCATTTGTTAAAAGACA
GTATTGGAACCATCGAGAAGCTATTATTTTCGATTGATGAGCTTGAGGTTGAAAGGGGAAATATACCACAACGAGAAGTC
AATTATCAAAGAAGCATCTTATTAGTCGATGACAATGATTCTTTACGAACGTTTTCTGCTATATTATTAGAAAAGCAGGG
TTATGATGTTTATCAAGCTCATGATGGTCAACAAGCTTTAGAGATATTAAAACAACATACTATGGATTTAATCTTAATGG
ATGTTGAAATGCCGGTTATTGATGGATTACAGGCGACGAATATCATCCGCAGTTCAATGGCCGAATACCGAAAAACGCCT
ATTATTGGCTATACAGGGGATAATAGCTCAGAAACGATAAATCGTCTCTACCGTGCTGGAATGAATGATTATATTGTTAA
ACCTGCTGATAAAGATAAATTATTAAATAAAGTGGCCGATTGGTTATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

56.955

100

0.57

Multiple sequence alignment