Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ABFV67_RS14180 Genome accession   NZ_CP158117
Coordinates   86315..87496 (+) Length   393 a.a.
NCBI ID   WP_004396503.1    Uniprot ID   A0A9X0R873
Organism   Vibrio metschnikovii strain IS021     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 81315..92496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS14155 (ABFV67_14150) - 82002..82790 (+) 789 WP_004396493.1 siderophore-interacting protein -
  ABFV67_RS14160 (ABFV67_14155) phnR 82879..83598 (-) 720 WP_332397187.1 phosphonate utilization transcriptional regulator PhnR -
  ABFV67_RS14165 (ABFV67_14160) rnk 83839..84249 (+) 411 WP_004396497.1 nucleoside diphosphate kinase regulator -
  ABFV67_RS14170 (ABFV67_14165) yjjG 84303..84977 (-) 675 WP_004396500.1 pyrimidine 5'-nucleotidase -
  ABFV67_RS14175 (ABFV67_14170) elbB 85072..85722 (+) 651 WP_161425397.1 isoprenoid biosynthesis glyoxalase ElbB -
  ABFV67_RS14180 (ABFV67_14175) cqsA 86315..87496 (+) 1182 WP_004396503.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ABFV67_RS14185 (ABFV67_14180) cqsS 87676..89724 (-) 2049 WP_306687211.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43622.68 Da        Isoelectric Point: 6.8456

>NTDB_id=1009841 ABFV67_RS14180 WP_004396503.1 86315..87496(+) (cqsA) [Vibrio metschnikovii strain IS021]
MKYGTSKKQLPEFIQQRLDLFINDLIDSNNNGKHLVLGKRPSTNDIILQSNDYLSLSHHPLIKAHLKQAIDDSTDSVFMS
AIFLQDEADKPDLEQQLAQFAQFDTCLLSQSGWNANTALLQTICSADTNVYIDFFAHMSLWEGARYANAHLHPFMHNHCD
HLVKLIKRHGPGLIVVDSIYSTIGTVAPLADLVAIAKQYGCAILVDESHSLGTHGPKGAGLLAELGLSSQVDFMTVSLAK
SFAYRAGAIWANNHVDRCLPFVGYPAIFSSTILPYEVAALSATLSVIQSADERRKQLFRHSEQLRHGLLELGFTIRSQSQ
IIALETGDERNTENVRDFLENNGVFGAVFCRPATAKNKNIIRLSLNSSLKDSDIQKILSVCESAIHNKQLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1009841 ABFV67_RS14180 WP_004396503.1 86315..87496(+) (cqsA) [Vibrio metschnikovii strain IS021]
ATGAAATATGGCACCTCAAAAAAACAACTACCTGAATTTATTCAACAACGATTAGATTTATTTATTAACGACCTTATTGA
TAGTAATAATAATGGCAAACATTTGGTTCTAGGAAAGCGTCCAAGCACTAATGATATTATTTTACAGAGTAATGATTACC
TTAGTTTATCTCATCATCCGCTCATTAAGGCTCACTTAAAACAAGCCATCGATGATAGTACCGATAGTGTGTTTATGTCG
GCGATCTTTTTACAAGATGAGGCTGATAAACCTGATCTTGAGCAACAGCTTGCCCAATTTGCTCAATTTGATACGTGTCT
ACTTTCGCAGTCTGGCTGGAATGCGAATACCGCACTATTACAAACGATCTGCTCAGCCGATACCAACGTCTATATCGACT
TTTTTGCTCATATGTCACTTTGGGAGGGAGCTCGCTATGCCAATGCTCATCTGCACCCTTTTATGCATAATCACTGTGAT
CATTTAGTGAAGCTCATTAAACGTCATGGACCCGGATTGATCGTGGTCGATTCTATCTATAGTACAATTGGTACTGTCGC
CCCATTAGCAGATTTAGTTGCGATAGCTAAACAGTATGGTTGCGCTATTTTAGTTGATGAGTCCCATTCACTCGGAACTC
ATGGTCCTAAAGGTGCCGGTTTGCTCGCTGAACTTGGTTTATCATCACAGGTTGATTTTATGACGGTGAGTTTAGCGAAA
AGCTTTGCTTATCGAGCTGGCGCTATCTGGGCGAATAACCATGTTGATCGCTGTTTACCTTTTGTCGGTTATCCCGCGAT
CTTTAGCTCGACAATTCTACCTTATGAAGTCGCAGCGCTCAGTGCTACGTTATCGGTAATCCAATCGGCGGATGAAAGAA
GAAAACAACTTTTTCGTCACAGTGAGCAGTTACGTCATGGCTTACTTGAACTTGGTTTTACGATTCGTAGTCAATCGCAA
ATTATTGCTTTAGAAACAGGCGATGAACGTAATACCGAAAATGTTCGTGATTTTCTAGAGAATAATGGCGTATTTGGCGC
AGTCTTTTGTCGCCCTGCCACGGCAAAAAATAAAAACATTATTCGATTATCGTTAAACAGCTCACTAAAAGACTCTGACA
TTCAAAAAATTCTCTCAGTCTGTGAGTCTGCGATACACAATAAGCAACTCTATTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.814

98.728

0.679

Multiple sequence alignment