Detailed information NTG1009832

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABFV67_RS11290
• Genome accession: NZ_CP158116
• Coordinates: 2458949..2459926 (-)
• Length: 325 a.a.
• NCBI ID: WP_332397065.1
• Uniprot ID: -
• Organism: Vibrio metschnikovii strain IS021
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2453949..2464926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFV67_RS11275 (ABFV67_11275)	cysP	2453990..2454991 (-)	1002	WP_342639066.1	thiosulfate ABC transporter substrate-binding protein CysP	-
ABFV67_RS11280 (ABFV67_11280)	cysM	2455252..2456142 (+)	891	WP_158137831.1	cysteine synthase CysM	-
ABFV67_RS11285 (ABFV67_11285)	mutS	2456304..2458886 (+)	2583	WP_342639067.1	DNA mismatch repair protein MutS	-
ABFV67_RS11290 (ABFV67_11290)	rpoS	2458949..2459926 (-)	978	WP_332397065.1	RNA polymerase sigma factor RpoS	Regulator
ABFV67_RS11295 (ABFV67_11295)	nlpD	2459999..2460967 (-)	969	WP_170906522.1	murein hydrolase activator NlpD	-
ABFV67_RS11300 (ABFV67_11300)	-	2460967..2461593 (-)	627	WP_004395999.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABFV67_RS11305 (ABFV67_11305)	surE	2461597..2462352 (-)	756	WP_154169165.1	5'/3'-nucleotidase SurE	-
ABFV67_RS11310 (ABFV67_11310)	truD	2462345..2463391 (-)	1047	WP_342639068.1	tRNA pseudouridine(13) synthase TruD	-
ABFV67_RS11315 (ABFV67_11315)	ispF	2463553..2464029 (-)	477	WP_004396002.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABFV67_RS11320 (ABFV67_11320)	ispD	2464026..2464676 (-)	651	WP_233268205.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37251.13 Da
• Isoelectric Point: 4.6671

>NTDB_id=1009832 ABFV67_RS11290 WP_332397065.1 2458949..2459926(-) (rpoS) [Vibrio metschnikovii strain IS021]
MSISNSVTKVEDFDFDPEVINAAESDVEQLSATNLKEEYDASSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQRLDHEPTAEKIAAELDKPVEDVNKMLRLNERISSVDTPIGGDGDKALLDILPDSNHSDPEVS
TQDDDIRLSLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNMEALFN
VDNDN

Nucleotide

• Length: 978 bp

>NTDB_id=1009832 ABFV67_RS11290 WP_332397065.1 2458949..2459926(-) (rpoS) [Vibrio metschnikovii strain IS021]
ATGAGTATCAGCAATTCAGTCACTAAAGTCGAAGATTTTGATTTTGACCCTGAAGTTATCAACGCAGCGGAGTCTGACGT
TGAGCAACTATCCGCCACTAACCTCAAAGAAGAATACGATGCATCGAGCAAAAGCTTAGATGCAACACAGATGTATTTGA
GTGAAATTGGTTTTTCACCCCTTTTAACCGCCGAAGAAGAAGTCCTTTACGCTCGACGTGCATTACGTGGTGATGAGGCC
GCGCGCAAGCGAATGATTGAAAGTAACTTACGCTTGGTGGTGAAAATCTCTCGCCGTTACAGTAACCGTGGTCTAGCGTT
GCTCGATTTGATTGAAGAAGGCAACCTAGGCTTGATCCGAGCCGTTGAAAAATTTGATCCAGAACGAGGTTTTCGTTTTT
CGACTTATGCCACGTGGTGGATTCGTCAAACCATCGAACGGGCGCTGATGAATCAAACTCGTACCATTCGTCTACCGATT
CATGTCGTCAAAGAGCTCAATATTTATTTGCGCACAGCACGTGAACTTTCACAGCGTTTGGACCATGAACCTACGGCAGA
GAAAATTGCCGCTGAGCTGGACAAGCCAGTTGAAGATGTCAATAAAATGCTACGTTTGAATGAGCGGATCAGTTCTGTTG
ATACTCCGATCGGTGGCGATGGCGATAAAGCATTGTTGGATATTCTGCCAGACTCTAATCATTCTGATCCGGAAGTGTCG
ACTCAAGATGATGATATTCGTTTATCTTTGCTTAATTGGCTTGATGAGCTCAATCCAAAGCAAAAAGAAGTCTTGGCGCG
CCGTTTTGGATTACTGGGTTATGAACCTTCAACGTTGGAAGAAGTTGGGCGAGAAATTAATCTTACCCGTGAGCGAGTCA
GACAGATCCAAGTAGAAGGCTTACGCCGCCTACGCGAGATCCTCGTTAAACAAGGGCTGAATATGGAAGCTTTGTTTAAT
GTCGATAACGACAATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.866	100	0.895