Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ABFV67_RS02330 Genome accession   NZ_CP158116
Coordinates   493346..493975 (-) Length   209 a.a.
NCBI ID   WP_110167828.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 488346..498975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS02320 (ABFV67_02320) aceF 489661..491547 (+) 1887 WP_342639203.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ABFV67_RS02325 (ABFV67_02325) lpdA 491814..493241 (+) 1428 WP_004394244.1 dihydrolipoyl dehydrogenase -
  ABFV67_RS02330 (ABFV67_02330) opaR 493346..493975 (-) 630 WP_110167828.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ABFV67_RS02335 (ABFV67_02335) hpt 494362..494892 (+) 531 WP_004394241.1 hypoxanthine phosphoribosyltransferase -
  ABFV67_RS02340 (ABFV67_02340) can 494970..495638 (-) 669 WP_004394240.1 carbonate dehydratase -
  ABFV67_RS02345 (ABFV67_02345) - 495902..496825 (+) 924 WP_154170172.1 ABC transporter ATP-binding protein -
  ABFV67_RS02350 (ABFV67_02350) - 496825..497595 (+) 771 WP_004394238.1 ABC transporter permease -
  ABFV67_RS02355 (ABFV67_02355) panC 497722..498603 (-) 882 WP_154170174.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23977.41 Da        Isoelectric Point: 6.6008

>NTDB_id=1009815 ABFV67_RS02330 WP_110167828.1 493346..493975(-) (opaR) [Vibrio metschnikovii strain IS021]
MDASIEKRPRTRLSPQKRKQQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVREFSNFL
TDHIDLDLHAKQNMHNIASGMVSLAIDDCHWLKVWFEWSASTRDEVWPLFMSSNRTNQLLVKNVFSKAIERSEVCSKHNP
EDLATLFHGICYSLFVQANRARDEADMQKLVNNYLNMLCIYQGDRAVAI

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1009815 ABFV67_RS02330 WP_110167828.1 493346..493975(-) (opaR) [Vibrio metschnikovii strain IS021]
ATGGACGCATCTATTGAGAAACGCCCTAGAACAAGGCTATCTCCACAAAAACGTAAACAGCAACTCATGGAAATCGCGCT
AGAAGTCTTCGCGAAACGAGGTATTGGTCGTGGCGGCCATGCTGACATTGCTGAGATTGCTCAGGTCTCAGTAGCCACGG
TATTCAATTACTTCCCGACCCGTGAAGATCTCGTCGATGACGTTCTCACTTTTGTGGTGCGTGAGTTCTCTAATTTCTTA
ACTGACCATATCGATCTCGATTTGCATGCAAAGCAAAATATGCACAATATCGCGTCGGGTATGGTGAGTTTGGCTATCGA
CGATTGTCACTGGTTAAAAGTGTGGTTTGAGTGGAGCGCCTCTACGCGTGATGAAGTATGGCCACTCTTTATGTCGAGTA
ATCGTACCAATCAACTGCTAGTGAAAAATGTCTTTTCAAAAGCGATTGAGCGCTCAGAAGTATGTAGCAAACATAACCCT
GAAGATCTTGCTACCCTGTTTCACGGCATCTGCTACTCGCTATTCGTTCAAGCCAATCGAGCGCGTGATGAGGCCGATAT
GCAGAAACTGGTTAATAACTATTTAAATATGCTCTGTATCTATCAAGGCGATCGCGCAGTAGCTATCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

77.778

94.737

0.737
  hapR Vibrio cholerae C6706

75.743

96.651

0.732
  hapR Vibrio cholerae strain A1552

75.743

96.651

0.732

Multiple sequence alignment