Detailed information NTG1009570

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABMQ39_RS03165
• Genome accession: NZ_CP158025
• Coordinates: 684462..685328 (-)
• Length: 288 a.a.
• NCBI ID: WP_010951890.1
• Uniprot ID: Q88Q64
• Organism: Pseudomonas alloputida strain Pa_12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 679462..690328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABMQ39_RS03130 (ABMQ39_03130)	-	679934..681229 (-)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-
ABMQ39_RS03135 (ABMQ39_03135)	-	681314..681487 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
ABMQ39_RS03140 (ABMQ39_03140)	-	681620..682249 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
ABMQ39_RS03145 (ABMQ39_03145)	-	682305..682736 (-)	432	WP_049588119.1	hypothetical protein	-
ABMQ39_RS03150 (ABMQ39_03150)	-	682823..683530 (+)	708	WP_049588121.1	energy-coupling factor ABC transporter permease	-
ABMQ39_RS03155 (ABMQ39_03155)	yacG	683642..683842 (-)	201	WP_010951889.1	DNA gyrase inhibitor YacG	-
ABMQ39_RS03160 (ABMQ39_03160)	coaE	683839..684462 (-)	624	WP_004575721.1	dephospho-CoA kinase	-
ABMQ39_RS03165 (ABMQ39_03165)	pilD	684462..685328 (-)	867	WP_010951890.1	A24 family peptidase	Machinery gene
ABMQ39_RS03170 (ABMQ39_03170)	-	685331..686539 (-)	1209	WP_010951891.1	type II secretion system F family protein	-
ABMQ39_RS03175 (ABMQ39_03175)	-	686756..687166 (+)	411	WP_010951892.1	pilin	-
ABMQ39_RS03185 (ABMQ39_03185)	-	687475..688788 (+)	1314	WP_349987333.1	integrase arm-type DNA-binding domain-containing protein	-
ABMQ39_RS03190 (ABMQ39_03190)	-	688965..689840 (+)	876	WP_349987335.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31830.86 Da
• Isoelectric Point: 7.5986

>NTDB_id=1009570 ABMQ39_RS03165 WP_010951890.1 684462..685328(-) (pilD) [Pseudomonas alloputida strain Pa_12]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALVALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LFGLCLLRFRRDAMGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1009570 ABMQ39_RS03165 WP_010951890.1 684462..685328(-) (pilD) [Pseudomonas alloputida strain Pa_12]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGGTGG
CTCTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

3D structure

• AlphaFold DB: Q88Q64

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	49.822	97.569	0.486
pilD	Acinetobacter nosocomialis M2	49.11	97.569	0.479
pilD	Vibrio campbellii strain DS40M4	48.913	95.833	0.469
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451