Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0508_RS06480 Genome accession   NZ_LR822014
Coordinates   1260072..1261565 (-) Length   497 a.a.
NCBI ID   WP_011227407.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_36     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255072..1266565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0508_RS06450 (STHERMO_1436) - 1255202..1255579 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  H0508_RS06455 (STHERMO_1437) - 1255584..1256282 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  H0508_RS06460 (STHERMO_1438) - 1256294..1257079 (+) 786 WP_002951425.1 hypothetical protein -
  H0508_RS06465 (STHERMO_1439) - 1257129..1258058 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  H0508_RS06470 (STHERMO_1440) amiE 1258051..1259136 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  H0508_RS06475 (STHERMO_1441) amiD 1259146..1260072 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  H0508_RS06480 (STHERMO_1442) amiC 1260072..1261565 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  H0508_RS06485 (STHERMO_1443) amiA 1261627..1263594 (-) 1968 WP_011225333.1 peptide ABC transporter substrate-binding protein Regulator
  H0508_RS09305 (STHERMO_1444) - 1263950..1265199 (+) 1250 Protein_1233 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55721.59 Da        Isoelectric Point: 10.0618

>NTDB_id=1009563 H0508_RS06480 WP_011227407.1 1260072..1261565(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_36]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1009563 H0508_RS06480 WP_011227407.1 1260072..1261565(-) (amiC) [Streptococcus thermophilus isolate STH_CIRM_36]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCAAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTCTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.799

100

0.998
  amiC Streptococcus thermophilus LMD-9

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972