Detailed information NTG1009555

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABNG15_RS24215
• Genome accession: NZ_CP158022
• Coordinates: 5164116..5164988 (+)
• Length: 290 a.a.
• NCBI ID: WP_367086483.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CI00795
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5159116..5169988

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNG15_RS24200 (ABNG15_24200)	-	5160499..5160963 (-)	465	WP_016264268.1	pilin	-
ABNG15_RS24205 (ABNG15_24205)	pilB	5161194..5162894 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABNG15_RS24210 (ABNG15_24210)	pilC	5162898..5164115 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
ABNG15_RS24215 (ABNG15_24215)	pilD	5164116..5164988 (+)	873	WP_367086483.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ABNG15_RS24220 (ABNG15_24220)	coaE	5164985..5165596 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
ABNG15_RS24225 (ABNG15_24225)	yacG	5165593..5165793 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ABNG15_RS24230 (ABNG15_24230)	-	5165830..5166039 (-)	210	WP_003094660.1	hypothetical protein	-
ABNG15_RS24235 (ABNG15_24235)	-	5166145..5166834 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
ABNG15_RS24240 (ABNG15_24240)	-	5166831..5167301 (-)	471	WP_003103866.1	hypothetical protein	-
ABNG15_RS24245 (ABNG15_24245)	-	5167298..5167723 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
ABNG15_RS24250 (ABNG15_24250)	-	5167856..5168485 (+)	630	WP_015648058.1	DUF1780 domain-containing protein	-
ABNG15_RS24255 (ABNG15_24255)	-	5168482..5168931 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
ABNG15_RS24260 (ABNG15_24260)	-	5168957..5169127 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32003.07 Da
• Isoelectric Point: 8.0434

>NTDB_id=1009555 ABNG15_RS24215 WP_367086483.1 5164116..5164988(+) (pilD) [Pseudomonas aeruginosa strain CI00795]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIARWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1009555 ABNG15_RS24215 WP_367086483.1 5164116..5164988(+) (pilD) [Pseudomonas aeruginosa strain CI00795]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCAGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.643	96.552	0.528
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	48.201	95.862	0.462