Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABJ384_RS13565 Genome accession   NZ_CP157981
Coordinates   2810212..2811777 (+) Length   521 a.a.
NCBI ID   WP_349927946.1    Uniprot ID   A0AAU7SWA9
Organism   Acinetobacter sp. A1-4-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2805212..2816777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS13545 (ABJ384_13535) - 2805679..2806983 (+) 1305 WP_349927938.1 homoserine dehydrogenase -
  ABJ384_RS13550 (ABJ384_13540) thrC 2807040..2808179 (+) 1140 WP_349927940.1 threonine synthase -
  ABJ384_RS13555 (ABJ384_13545) - 2808282..2809328 (-) 1047 WP_349927942.1 serine hydrolase -
  ABJ384_RS13560 (ABJ384_13550) - 2809549..2810184 (+) 636 WP_349927944.1 response regulator -
  ABJ384_RS13565 (ABJ384_13555) pilS 2810212..2811777 (+) 1566 WP_349927946.1 ATP-binding protein Regulator
  ABJ384_RS13570 (ABJ384_13560) pilR 2811797..2813209 (+) 1413 WP_349929754.1 sigma-54 dependent transcriptional regulator Regulator
  ABJ384_RS13575 (ABJ384_13565) - 2813235..2814413 (-) 1179 WP_349927948.1 S41 family peptidase -
  ABJ384_RS13580 (ABJ384_13570) gpmI 2814440..2815987 (-) 1548 WP_349927950.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59400.17 Da        Isoelectric Point: 6.7058

>NTDB_id=1009492 ABJ384_RS13565 WP_349927946.1 2810212..2811777(+) (pilS) [Acinetobacter sp. A1-4-2]
MTQNTHNLEFNQYHLGIWYSTYRLIIATSLLLIFLLTYQRLNLDYHYPQLYLYVLIGYVSASFIQLIILKSIRFKTAQQL
PLLFVVDVIALSLLTLAVDGPNLQLSLLFVITIFAASLLLDAQKALIITLIAVISVIYQLFLGSIFDFSSLNNIGNSAIL
AFLFLVVYSSGQIAVKRFQLLENLNFSQSLELNRLQNLNRYILEQIELGYLVLDENCHIVLSNPAACLILGIPPLYAYDK
YPLYKAQPDLFELLKFDQLRDGEKFQFESQLSHYHMHIEVQKLMVPQQTLTLLVLQDATKLNQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANELLSDSDPHQQAVLSRMIAKQTQRIDRIVQDTLNMVRNKETHPSTIELKQFIPLLILEDLADIAP
QIKYTVQSKIFVHFDEAQLRQVLINLIRNAIRHNAPEHSHIELNVYLHDNNVRIDVRDFGAGVASKDLAYLFQPFFSTEI
TGTGLGLYLSHSFCEANQAKLNYVKQEQGACFRIECLQVAL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1009492 ABJ384_RS13565 WP_349927946.1 2810212..2811777(+) (pilS) [Acinetobacter sp. A1-4-2]
ATGACGCAAAATACCCATAATTTAGAGTTTAACCAATATCATTTAGGTATTTGGTATAGCACCTATAGACTCATTATTGC
GACCAGTCTTCTGCTGATTTTCTTACTCACGTATCAGCGCTTAAACCTCGATTATCACTATCCGCAGCTTTATCTTTACG
TGCTAATCGGCTACGTATCGGCAAGTTTTATCCAGTTAATCATACTCAAAAGCATACGCTTTAAAACTGCCCAGCAACTC
CCGCTGTTATTTGTTGTCGATGTCATTGCTTTAAGCTTGCTCACCCTCGCGGTAGATGGCCCGAACCTGCAATTGAGTTT
GCTGTTTGTGATTACCATCTTCGCGGCCTCGTTATTACTCGATGCCCAAAAGGCTTTGATCATTACCCTGATTGCCGTGA
TCAGTGTGATTTATCAGCTTTTTTTAGGCAGTATTTTTGATTTTTCTTCACTGAATAATATTGGCAACAGTGCGATCTTG
GCTTTTCTGTTTTTAGTGGTGTATAGCAGTGGGCAAATTGCAGTAAAACGCTTTCAACTGCTTGAAAATTTAAATTTTTC
GCAGTCTTTGGAATTAAACCGGCTGCAAAACCTGAATCGCTATATTCTGGAACAGATCGAACTGGGGTATCTGGTTTTAG
ATGAAAATTGTCATATTGTGCTGAGCAATCCTGCTGCCTGCCTGATTTTAGGCATTCCTCCGCTCTATGCCTATGACAAA
TATCCCTTATACAAGGCCCAGCCGGATTTATTTGAATTGCTTAAATTTGATCAACTGCGGGATGGGGAAAAATTTCAGTT
TGAGTCACAGCTCAGCCATTATCATATGCATATTGAAGTGCAAAAACTCATGGTGCCACAACAAACCCTGACATTATTGG
TATTGCAGGATGCCACCAAGCTCAATCAACGCGTACAACAATTAAAACTCGCGGCACTCGGGCAACTGTCCGCCAGTATT
GCTCATGAAATTCGCAATCCTTTAGCCGCGATTGTTCAGGCTAATGAACTTTTGAGTGATAGCGACCCGCATCAACAGGC
GGTATTGAGCCGAATGATTGCCAAGCAGACACAGCGTATTGACCGGATTGTACAAGACACGCTGAATATGGTGCGCAATA
AAGAAACCCACCCCTCAACCATTGAGTTGAAACAGTTTATTCCCCTACTAATTCTGGAAGATTTGGCTGATATTGCGCCC
CAAATTAAATATACTGTTCAAAGTAAAATTTTTGTGCATTTTGACGAGGCACAACTTCGTCAAGTGCTGATTAACCTGAT
TCGCAATGCCATTCGACATAATGCACCCGAGCATTCACATATCGAGTTGAATGTTTACTTACATGACAACAATGTGCGTA
TTGATGTTCGTGATTTTGGCGCGGGCGTTGCATCCAAGGATTTGGCTTATTTATTTCAACCTTTTTTTAGTACCGAAATC
ACAGGAACAGGTTTAGGATTGTACTTATCACATAGTTTTTGTGAAGCCAATCAGGCAAAACTGAACTATGTAAAACAAGA
ACAGGGAGCATGCTTTCGGATAGAATGCCTGCAAGTTGCTTTATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

62.178

96.929

0.603

Multiple sequence alignment