Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABJ384_RS08400 Genome accession   NZ_CP157981
Coordinates   1701714..1702154 (-) Length   146 a.a.
NCBI ID   WP_349926715.1    Uniprot ID   -
Organism   Acinetobacter sp. A1-4-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1696714..1707154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS08370 (ABJ384_08360) tadA 1696891..1697412 (-) 522 WP_180080322.1 tRNA adenosine(34) deaminase TadA -
  ABJ384_RS08375 (ABJ384_08365) - 1697417..1698541 (-) 1125 WP_349926709.1 enoyl-CoA hydratase/isomerase family protein -
  ABJ384_RS08380 (ABJ384_08370) ung 1698538..1699251 (-) 714 WP_086195473.1 uracil-DNA glycosylase -
  ABJ384_RS08385 (ABJ384_08375) - 1699299..1699895 (-) 597 WP_349926711.1 6-carboxytetrahydropterin synthase -
  ABJ384_RS08390 (ABJ384_08380) gspK 1700068..1701015 (-) 948 WP_349929723.1 type II secretion system minor pseudopilin GspK -
  ABJ384_RS08395 (ABJ384_08385) xcpW 1701034..1701717 (-) 684 WP_349926713.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABJ384_RS08400 (ABJ384_08390) xcpV 1701714..1702154 (-) 441 WP_349926715.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABJ384_RS08405 (ABJ384_08395) - 1702144..1702704 (-) 561 WP_349926717.1 type II secretion system protein -
  ABJ384_RS08410 (ABJ384_08400) - 1702723..1703328 (-) 606 WP_349926719.1 TetR/AcrR family transcriptional regulator -
  ABJ384_RS08415 (ABJ384_08405) - 1703374..1704147 (-) 774 WP_349926721.1 TatD family hydrolase -
  ABJ384_RS08420 (ABJ384_08410) - 1704174..1704515 (-) 342 WP_349926722.1 PilZ domain-containing protein -
  ABJ384_RS08425 (ABJ384_08415) - 1704537..1705520 (-) 984 WP_349926724.1 DNA polymerase III subunit delta' -
  ABJ384_RS08430 (ABJ384_08420) kdsB 1705534..1706295 (-) 762 WP_166168881.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16270.65 Da        Isoelectric Point: 10.0188

>NTDB_id=1009476 ABJ384_RS08400 WP_349926715.1 1701714..1702154(-) (xcpV) [Acinetobacter sp. A1-4-2]
MQARYSRHSSWLCVASKQRFTHRCSGFTLLEVMVALAIFATAAIAFTKVAMQYTQATSNAILRTKAQFVALNEVAVMEIN
QEWLQGTQSKQVTQQGETWQIDKSAQSTISPNVQRIEVQVSLFNVESGKVESGVTHLVFFNPKAKA

Nucleotide


Download         Length: 441 bp        

>NTDB_id=1009476 ABJ384_RS08400 WP_349926715.1 1701714..1702154(-) (xcpV) [Acinetobacter sp. A1-4-2]
ATGCAAGCTAGATACTCCAGGCATAGCTCTTGGTTATGTGTAGCATCGAAACAGCGTTTCACTCATCGCTGCTCAGGATT
TACCTTATTAGAAGTCATGGTGGCCTTGGCTATTTTTGCCACTGCTGCAATTGCTTTTACCAAAGTGGCGATGCAATACA
CTCAGGCAACATCGAATGCCATTTTAAGAACCAAGGCACAATTCGTGGCCTTGAATGAAGTCGCCGTGATGGAAATCAAT
CAGGAATGGTTGCAGGGAACCCAATCCAAACAGGTCACCCAGCAAGGTGAAACTTGGCAAATTGACAAGTCTGCACAATC
GACCATTAGTCCAAATGTACAACGCATAGAAGTACAGGTCAGTTTGTTTAATGTGGAAAGTGGCAAGGTTGAATCAGGAG
TGACGCATTTGGTTTTCTTCAACCCGAAGGCCAAAGCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(63-121)

Prokaryotic N-terminal methylation motif (N_methyl)

(22-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.839

84.932

0.678

Multiple sequence alignment