Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABJ384_RS01865 Genome accession   NZ_CP157981
Coordinates   394466..395098 (-) Length   210 a.a.
NCBI ID   WP_349928568.1    Uniprot ID   A0AAU7SYF2
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389466..400098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS01830 (ABJ384_01830) mlaE 389576..390355 (+) 780 WP_166168689.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ABJ384_RS01835 (ABJ384_01835) - 390355..391026 (+) 672 WP_349928564.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABJ384_RS01840 (ABJ384_01840) - 391045..391671 (+) 627 WP_180042128.1 ABC transporter substrate-binding protein -
  ABJ384_RS01845 (ABJ384_01845) - 391688..391978 (+) 291 WP_086195790.1 STAS domain-containing protein -
  ABJ384_RS01850 (ABJ384_01850) - 392217..393230 (-) 1014 WP_086195789.1 CorA family divalent cation transporter -
  ABJ384_RS01855 (ABJ384_01855) - 393380..393979 (+) 600 WP_166168693.1 TIGR00730 family Rossman fold protein -
  ABJ384_RS01860 (ABJ384_01860) - 393976..394383 (+) 408 WP_349928567.1 NUDIX domain-containing protein -
  ABJ384_RS01865 (ABJ384_01865) comF 394466..395098 (-) 633 WP_349928568.1 phosphoribosyltransferase family protein Machinery gene
  ABJ384_RS01870 (ABJ384_01870) recG 395233..397278 (-) 2046 WP_349928570.1 ATP-dependent DNA helicase RecG -
  ABJ384_RS01875 (ABJ384_01875) - 397314..398120 (+) 807 WP_349928572.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 24165.52 Da        Isoelectric Point: 9.9447

>NTDB_id=1009467 ABJ384_RS01865 WP_349928568.1 394466..395098(-) (comF) [Acinetobacter sp. A1-4-2]
MLQLIHPLLHKTMQSLFPCILCGIDQQRHHSVCTDCWQQLPWLKQTIQRQEIEIQAAFHYAYPMDRIIQKFKYEQQLHFQ
NLLAGSLIGLKLPKIQAIVPMPISHQRLAERGYNQSLVLAKLLAKQLNIPVWQPVARLAQHSQKGLSRIERLDQIDQQFV
IATKTRVRYRKVLMLDDVVTTGSSLHALKQKLEALGCQKVYAACIASAEI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1009467 ABJ384_RS01865 WP_349928568.1 394466..395098(-) (comF) [Acinetobacter sp. A1-4-2]
ATGCTGCAATTGATTCACCCCTTACTGCACAAAACCATGCAGAGCCTTTTCCCCTGTATACTTTGTGGCATAGACCAGCA
ACGTCATCATTCAGTCTGTACAGATTGCTGGCAACAATTGCCCTGGTTGAAACAGACCATCCAACGTCAGGAAATAGAGA
TTCAGGCGGCTTTTCATTATGCCTATCCGATGGATCGCATCATTCAAAAATTCAAATATGAACAACAGCTGCACTTTCAA
AATCTGCTTGCTGGCTCACTTATCGGTCTCAAACTTCCCAAAATCCAAGCTATTGTCCCGATGCCCATTTCCCATCAGCG
TTTGGCAGAACGGGGTTATAACCAGTCTTTGGTGCTTGCGAAACTCCTGGCAAAACAGCTGAATATTCCAGTCTGGCAAC
CGGTTGCACGACTGGCCCAACATTCGCAAAAAGGCTTGAGCCGGATCGAACGGCTGGATCAGATTGACCAGCAGTTTGTG
ATTGCCACAAAGACCCGTGTGCGTTACCGCAAAGTGCTGATGCTGGATGATGTGGTCACGACCGGCAGTTCGCTACATGC
TTTAAAACAGAAACTTGAAGCATTAGGCTGTCAAAAAGTTTATGCAGCCTGTATTGCCAGTGCAGAGATTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.577

99.048

0.6
  comF Acinetobacter baumannii D1279779

60.577

99.048

0.6

Multiple sequence alignment