Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABJ384_RS01470 Genome accession   NZ_CP157981
Coordinates   311976..312710 (+) Length   244 a.a.
NCBI ID   WP_349928479.1    Uniprot ID   A0AAU7SXE5
Organism   Acinetobacter sp. A1-4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306976..317710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS01455 (ABJ384_01455) ponA 307571..310099 (-) 2529 WP_349928473.1 penicillin-binding protein PBP1a -
  ABJ384_RS01460 (ABJ384_01460) pilM 310265..311326 (+) 1062 WP_349928475.1 pilus assembly protein PilM Machinery gene
  ABJ384_RS01465 (ABJ384_01465) pilN 311326..311979 (+) 654 WP_349928477.1 PilN domain-containing protein Machinery gene
  ABJ384_RS01470 (ABJ384_01470) pilO 311976..312710 (+) 735 WP_349928479.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABJ384_RS01475 (ABJ384_01475) pilP 312713..313240 (+) 528 WP_180043050.1 pilus assembly protein PilP Machinery gene
  ABJ384_RS01480 (ABJ384_01480) pilQ 313258..315429 (+) 2172 WP_349928481.1 type IV pilus secretin PilQ family protein Machinery gene
  ABJ384_RS01485 (ABJ384_01485) aroK 315466..316014 (+) 549 WP_349928483.1 shikimate kinase AroK -
  ABJ384_RS01490 (ABJ384_01490) aroB 316032..317117 (+) 1086 WP_349928484.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27453.13 Da        Isoelectric Point: 4.7731

>NTDB_id=1009459 ABJ384_RS01470 WP_349928479.1 311976..312710(+) (pilO) [Acinetobacter sp. A1-4-2]
MSLDEFDELNPNEAVVRKKKMTLDKFLQQFNTLDPNNYGSWPLSVKITCWILIVVMIAFLGYFLTIKSKLDNISNAAAQE
QNLLNEFREKDSKLRNLQLLQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
IAIEATGDYHAFGSFVSGIAALPRIVTLHDFEITASENKEKKSDIPQVNYNVKAKTYRYIGAADAQATETQAANANSTAT
TGGK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1009459 ABJ384_RS01470 WP_349928479.1 311976..312710(+) (pilO) [Acinetobacter sp. A1-4-2]
ATGAGTCTCGATGAATTTGATGAATTAAATCCAAATGAAGCTGTAGTACGTAAAAAGAAAATGACGCTGGATAAGTTTCT
TCAGCAGTTCAATACCTTAGATCCAAATAATTATGGTAGTTGGCCCTTATCTGTCAAAATCACCTGTTGGATTTTGATTG
TTGTCATGATTGCTTTTCTCGGGTATTTTTTAACAATTAAAAGTAAATTGGATAATATTTCGAATGCTGCTGCTCAAGAG
CAAAACCTGCTTAACGAGTTTCGTGAAAAAGATTCTAAACTTCGCAATTTGCAGTTATTGCAAGCACAGTTACAGGAAAT
GGAAGCGAATTTTAATCAGCAATTGGAACAATTGCCTAAAGAAACTGAAATTCCAGGACTGGTTGAAGATATCAATGTGA
CTGGTGTGAATTCTGGTTTGAAATTTAAAAATATCCGTTTAGAAAATGAAATAAAACAAGAGTTCTTTATTGAACAGCCA
ATTGCGATTGAGGCAACCGGTGATTATCATGCTTTTGGTTCTTTTGTAAGCGGGATTGCTGCACTGCCACGTATTGTGAC
TTTGCATGATTTTGAGATTACCGCCTCGGAAAATAAAGAGAAAAAATCTGATATTCCTCAAGTGAATTATAACGTTAAAG
CAAAAACATACCGTTATATCGGTGCTGCGGATGCTCAAGCGACAGAAACGCAAGCTGCGAATGCAAATTCGACTGCTACG
ACTGGAGGGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

70.325

100

0.709
  comO Acinetobacter baylyi ADP1

68.033

100

0.68

Multiple sequence alignment