Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   H0505_RS06425 Genome accession   NZ_LR822012
Coordinates   1244754..1245398 (-) Length   214 a.a.
NCBI ID   WP_002951384.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239754..1250398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS06400 (STHERMO_1406) - 1241855..1242853 (-) 999 WP_179970956.1 NAD(P)/FAD-dependent oxidoreductase -
  H0505_RS06405 (STHERMO_1407) trmD 1242855..1243574 (-) 720 WP_179970957.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H0505_RS06410 (STHERMO_1408) rimM 1243564..1244082 (-) 519 WP_011226286.1 ribosome maturation factor RimM -
  H0505_RS06425 (STHERMO_1409) vraR 1244754..1245398 (-) 645 WP_002951384.1 response regulator transcription factor Regulator
  H0505_RS06430 (STHERMO_1410) - 1245388..1246398 (-) 1011 WP_011226288.1 sensor histidine kinase -
  H0505_RS06435 (STHERMO_1411) liaF 1246395..1247093 (-) 699 WP_179970958.1 cell wall-active antibiotics response protein LiaF -
  H0505_RS09810 (STHERMO_1412) - 1247359..1247514 (-) 156 WP_011226290.1 ion channel -
  H0505_RS06445 (STHERMO_1415) stkP/pknB 1248151..1250022 (-) 1872 WP_179970959.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24048.39 Da        Isoelectric Point: 4.5864

>NTDB_id=1009352 H0505_RS06425 WP_002951384.1 1244754..1245398(-) (vraR) [Streptococcus thermophilus isolate STH_CIRM_30]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAENGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1009352 H0505_RS06425 WP_002951384.1 1244754..1245398(-) (vraR) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGTCGAATAAGATTAATGTAATTTTGGTAGATGATCATGAAATGGTTCGTTTAGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTGGTTGGAGAGGCAGAAAACGGCCGTGAGGGTGTCGATCTTGCCCTGGAGCTACGACCAGATGTCG
TTGTTATGGACCTTGTTATGCCTGAGCTAGATGGTGTTCAGGCGACTTTGGAATTGCTAAAAGAATGGCCTGAAGCTAAG
ATTCTAGTTTTGACCAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGCGCCAAAGGCTATATGCTTAA
AACGAGCAGTGCAGCAGAGATTCTAAATAGTATCCGTAAGGTTTACCGTGGAGAGGAAGCTATCGAAACTGAGGTAGACA
ATAAGATTAAATACCATGATAGTCACCCGAACTTACATGATGACTTGACCGCGCGCGAACGTGATATCTTAGCCCTCCTA
GCTAAAGGCTATGACAATCAAACCATTGCTAACGAACTTTTTATTTCTTTAAAAACCGTCAAGACTCATGTGTCTAATAT
CCTTGGGAAATTAAATGTTGATGACCGTACTCAGGCTGTAGTTTATGCCTTTAGACATCATCTGGTTTCACAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379