Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABNK32_RS25945 | Genome accession | NZ_CP157950 |
| Coordinates | 5367696..5368493 (+) | Length | 265 a.a. |
| NCBI ID | WP_032694399.1 | Uniprot ID | A0A2J5PD60 |
| Organism | Klebsiella michiganensis strain K2405 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5362696..5373493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABNK32_RS25910 (ABNK32_25885) | gspH | 5362843..5363349 (+) | 507 | WP_032694394.1 | type II secretion system minor pseudopilin GspH | - |
| ABNK32_RS25915 (ABNK32_25890) | gspI | 5363346..5363711 (+) | 366 | WP_009654631.1 | type II secretion system minor pseudopilin GspI | - |
| ABNK32_RS25920 (ABNK32_25895) | gspJ | 5363708..5364304 (+) | 597 | WP_032694395.1 | type II secretion system minor pseudopilin GspJ | - |
| ABNK32_RS25925 (ABNK32_25900) | gspK | 5364301..5365281 (+) | 981 | WP_014227974.1 | type II secretion system minor pseudopilin GspK | - |
| ABNK32_RS25930 (ABNK32_25905) | gspL | 5365274..5366467 (+) | 1194 | WP_032694396.1 | type II secretion system protein GspL | - |
| ABNK32_RS25935 (ABNK32_25910) | - | 5366460..5366945 (+) | 486 | WP_032694397.1 | type II secretion system protein M | - |
| ABNK32_RS25940 (ABNK32_25915) | - | 5366935..5367693 (+) | 759 | WP_032694398.1 | type II secretion system protein N | - |
| ABNK32_RS25945 (ABNK32_25920) | pilD | 5367696..5368493 (+) | 798 | WP_032694399.1 | A24 family peptidase | Machinery gene |
| ABNK32_RS25950 (ABNK32_25925) | hrpB | 5368591..5371020 (-) | 2430 | WP_064388485.1 | ATP-dependent helicase HrpB | - |
| ABNK32_RS25955 (ABNK32_25930) | thpR | 5371093..5371629 (+) | 537 | WP_032694401.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| ABNK32_RS25960 (ABNK32_25935) | sfsA | 5371629..5372345 (+) | 717 | WP_014227967.1 | DNA/RNA nuclease SfsA | - |
| ABNK32_RS25965 (ABNK32_25940) | dksA | 5372510..5372965 (+) | 456 | WP_004098689.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29150.77 Da Isoelectric Point: 8.3410
>NTDB_id=1009338 ABNK32_RS25945 WP_032694399.1 5367696..5368493(+) (pilD) [Klebsiella michiganensis strain K2405]
MENIALLPEFAAQFPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
MENIALLPEFAAQFPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMERAEGVNLCLPASFCPQCRQPIAWRDNIPLLSFLWL
RGRARCCGQPISRRYPLMELTTGALFVLAGYLMAPGMPLLGGLIFVSVLLILAAIDAQTQLLPDRLTLPLLWAGLLFNLS
DTFAPLAEAVIGAMVGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQPLPQTLLLASASGLVWTLLQRLVTRR
SLEQPLAFGPWLALAGGGIFLWSQV
Nucleotide
Download Length: 798 bp
>NTDB_id=1009338 ABNK32_RS25945 WP_032694399.1 5367696..5368493(+) (pilD) [Klebsiella michiganensis strain K2405]
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATTCCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTAAATCTCTGCC
TCCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCAGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGTCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
ATGGAAAATATCGCGCTGTTACCCGAGTTCGCCGCGCAATTCCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGGACT
GGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGAACGCGCAGAGGGGGTAAATCTCTGCC
TCCCCGCCTCGTTCTGCCCGCAGTGCCGTCAGCCTATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTTTTATGGCTC
AGGGGGCGCGCGCGCTGCTGCGGGCAGCCGATCTCGCGTCGCTATCCCCTGATGGAGCTGACGACCGGCGCGCTGTTTGT
ACTCGCGGGGTACCTGATGGCTCCGGGCATGCCGCTGCTGGGCGGGCTAATTTTCGTGTCCGTACTGCTGATCCTCGCCG
CCATCGACGCGCAAACGCAGCTGCTGCCTGACAGGCTGACGCTGCCGCTGCTGTGGGCCGGGCTGCTGTTCAATCTTTCC
GATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGTCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGTGTT
CCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCAGCGCTCGGCGCGTGGCTCGGCTGGC
AGCCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGTCTGGTCTGGACGCTGCTGCAGCGTCTGGTAACCCGTCGT
TCGCTCGAACAACCTCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.808 |
98.491 |
0.491 |
| pilD | Neisseria gonorrhoeae MS11 |
44.604 |
100 |
0.468 |
| pilD | Vibrio campbellii strain DS40M4 |
43.273 |
100 |
0.449 |
| pilD | Acinetobacter nosocomialis M2 |
44.788 |
97.736 |
0.438 |
| pilD | Acinetobacter baumannii D1279779 |
44.402 |
97.736 |
0.434 |