Detailed information NTG0100932

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: D934_RS04480
• Genome accession: NZ_CP006696
• Coordinates: 1049674..1051950 (+)
• Length: 758 a.a.
• NCBI ID: WP_020850916.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi Ann-1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1044674..1056950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D934_RS04450 (D934_04820)	-	1045160..1045942 (+)	783	WP_020850913.1	thiol:disulfide interchange protein DsbA/DsbL	-
D934_RS04455 (D934_04825)	-	1045958..1046728 (+)	771	WP_012382517.1	endonuclease/exonuclease/phosphatase family protein	-
D934_RS04460 (D934_04830)	hflD	1046836..1047450 (-)	615	WP_020850914.1	high frequency lysogenization protein HflD	-
D934_RS04465 (D934_04835)	mnmA	1047447..1048586 (-)	1140	WP_020850915.1	tRNA 2-thiouridine(34) synthase MnmA	-
D934_RS04470 (D934_04840)	-	1048583..1049041 (-)	459	WP_004083752.1	NUDIX hydrolase	-
D934_RS04475 (D934_04845)	clpS	1049221..1049541 (+)	321	WP_004083751.1	ATP-dependent Clp protease adapter ClpS	-
D934_RS04480 (D934_04855)	clpC	1049674..1051950 (+)	2277	WP_020850916.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
D934_RS04485 (D934_04860)	infA	1052299..1052517 (-)	219	WP_004083749.1	translation initiation factor IF-1	-
D934_RS04490 (D934_04865)	aat	1052634..1053365 (-)	732	WP_020850917.1	leucyl/phenylalanyl-tRNA--protein transferase	-
D934_RS04495 (D934_04870)	-	1053377..1054510 (-)	1134	WP_024749288.1	GNAT family N-acetyltransferase	-
D934_RS04500 (D934_04875)	trxB	1054938..1055903 (-)	966	WP_020850919.1	thioredoxin-disulfide reductase	-

Sequence

Protein

• Length: 758 a.a.
• Molecular weight: 83860.32 Da
• Isoelectric Point: 6.3579

>NTDB_id=100932 D934_RS04480 WP_020850916.1 1049674..1051950(+) (clpC) [Xylella fastidiosa subsp. sandyi Ann-1]
MFSKDLEQTIGQCYKRTREACHEFMTVEHLLLSLLDNPLAHAVLKACGADVTRLKRDLEQAIEVSITRLDADDGRDTQPT
LGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYFLNQQDISRLDIVNYLSHGITRMGEESDIGQAAENEAKG
ESEANKGDALAEYAINLNEHARNGRIDPLVGRKDEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLAKRIVDRSVPEV
LADAVIYSLDLGALVAGTKYRGDFEKRLKGVLSVLRKTPNVVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCI
GSTTFQEYRGIFEKDRALARRFQKIDIVEPTAGEAFEILQGLKPKYEAHHGVTYADDALRAAVDLSVKHIGDRLLPDKAI
DVIDEAGARQRLLPEKERKELIDIEEIETIVTKMARVPAKQVSVSDKDVLKHLERNLKMVIFGQEPAIEMLSSAIKLARS
GLGNPDKPIGNFLLAGPTGVGKTEVTKQLAHHLGIELVRFDMSEYMEPHSVSRLIGAPPGYVGFDQGGLLTEKIVKTPHC
VLLLDEVEKAHMDVFNILLQVMDRGVLTDTNGREASFKNVILVMTTNAGASQSSRRTIGFTKQDHTSDAMEVICRSFSPE
FRNRLDAIVQFQPLGFSHILRVVDKFIIELEMLLQEKRVVLSATPIARDWLAQHGFDPLMGARPMARVIQEKIKRPLADE
LLFGKLLNGGRVGIDVRDNELIVETYSEPELLFPATVE

Nucleotide

• Length: 2277 bp

>NTDB_id=100932 D934_RS04480 WP_020850916.1 1049674..1051950(+) (clpC) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGTTCAGCAAAGATCTCGAGCAAACAATAGGCCAGTGCTACAAGCGAACGCGTGAGGCGTGTCATGAGTTCATGACCGT
TGAGCATCTGCTTCTTTCATTGTTGGACAATCCATTGGCGCACGCTGTACTGAAGGCTTGCGGAGCGGATGTTACCAGGC
TGAAGCGTGACCTTGAGCAGGCCATTGAGGTATCTATTACCCGCTTGGATGCCGATGACGGCCGTGATACTCAGCCGACG
CTTGGTTTCCAGCGAGTGCTGCAGCGTGCTGTTTACCATGTGCAGTCTTCTGGTAAGAAGGAGGTGACCGGCGCTAATGT
ACTGGTGGCTATCTTTGGTGAAAAGGATTCGCATGCCGTCTACTTTCTGAATCAGCAGGACATCAGCCGACTCGATATCG
TCAACTATTTATCCCACGGTATTACCCGTATGGGCGAGGAGAGTGACATCGGGCAAGCTGCTGAGAATGAGGCTAAGGGG
GAAAGTGAGGCGAATAAGGGGGATGCTCTTGCTGAATATGCTATTAACTTGAATGAACATGCACGGAATGGACGAATTGA
TCCATTGGTTGGGCGCAAAGATGAGATTGAACGTACGATCCAGGTGTTATGCCGACGTCGCAAGAATAACCCGCTCTATG
TAGGTGAAGCGGGCGTTGGTAAAACCGCAATCGCTGAGGGTTTGGCCAAGCGTATTGTTGATCGTAGTGTGCCGGAGGTG
CTTGCCGATGCGGTGATCTACTCGTTGGATCTTGGCGCTCTGGTGGCTGGTACCAAATATCGTGGTGACTTTGAAAAACG
TCTGAAGGGTGTGTTAAGTGTGTTGCGCAAAACCCCTAACGTAGTTTTGTTTATTGATGAAATCCATACCATCATCGGTG
CTGGTTCCGCTTCGGGTGGCACGATGGATGCGTCTAATTTGATCAAGCCAGCCTTGGCTTCAGGTGAGTTACGTTGCATT
GGTTCGACCACGTTTCAAGAGTATCGCGGCATCTTCGAAAAGGACCGTGCTTTGGCGAGGCGTTTTCAGAAGATCGATAT
CGTCGAGCCTACCGCGGGCGAGGCTTTCGAGATTTTACAAGGACTCAAGCCTAAGTATGAGGCACATCACGGCGTTACCT
ATGCTGATGACGCATTGCGCGCTGCGGTTGATTTATCGGTCAAGCACATCGGTGATCGGTTGTTGCCGGATAAGGCGATT
GATGTGATAGATGAGGCGGGCGCGCGTCAGCGCCTATTGCCGGAGAAAGAACGCAAAGAGCTGATCGATATTGAGGAGAT
TGAGACCATTGTTACGAAGATGGCTAGGGTCCCGGCGAAGCAGGTGAGTGTGAGCGATAAGGACGTTTTGAAGCACCTCG
AACGCAATTTGAAGATGGTGATCTTTGGTCAGGAGCCAGCGATTGAGATGCTGTCGTCGGCAATTAAGTTGGCGCGCAGT
GGCCTAGGTAATCCGGATAAGCCGATTGGAAACTTCCTGCTTGCTGGCCCAACGGGGGTTGGTAAAACTGAGGTGACTAA
ACAATTAGCACACCATCTTGGGATCGAGTTGGTACGTTTTGACATGTCTGAGTACATGGAGCCGCATTCGGTGAGTCGTC
TGATTGGCGCGCCTCCGGGCTATGTTGGTTTTGATCAGGGAGGGTTGCTGACTGAGAAGATCGTCAAGACTCCACACTGC
GTTCTGCTGTTGGACGAGGTGGAGAAAGCGCATATGGATGTCTTCAATATTCTCCTACAGGTCATGGATCGCGGTGTGTT
AACGGATACCAATGGACGTGAGGCGAGTTTTAAAAATGTGATCCTGGTAATGACGACCAATGCAGGTGCGTCCCAATCTT
CACGGCGTACGATTGGTTTCACTAAGCAGGACCATACCAGCGATGCGATGGAAGTGATTTGTCGCAGCTTCAGCCCTGAG
TTCCGCAATCGTCTTGATGCGATTGTGCAGTTTCAGCCACTGGGTTTCAGTCACATTCTGCGGGTTGTCGACAAGTTCAT
CATTGAGTTGGAGATGTTACTTCAAGAGAAACGTGTTGTTTTGTCGGCTACGCCGATTGCTCGCGACTGGCTGGCTCAGC
ATGGTTTTGATCCGCTTATGGGTGCTCGTCCGATGGCACGTGTGATTCAAGAGAAAATCAAACGCCCACTTGCAGACGAA
TTGTTGTTTGGTAAGTTGCTCAACGGTGGTCGGGTAGGCATTGATGTGCGTGACAATGAGTTAATTGTTGAGACTTATTC
GGAACCAGAGCTGTTGTTTCCGGCGACCGTGGAGTAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (353-454)

• ATPase family associated with various cellular activities (AAA) (AAA) (212-310)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-62)

• AAA domain (Cdc48 subfamily) (AAA_2) (487-648)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (654-732)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.825	100	0.421
clpC	Streptococcus pneumoniae TIGR4	37.129	100	0.396
clpC	Streptococcus pneumoniae Rx1	37.129	100	0.396
clpC	Streptococcus pneumoniae D39	37.129	100	0.396
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	36.777	100	0.394
clpC	Streptococcus thermophilus LMG 18311	37.643	100	0.392
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	38.963	99.208	0.387