Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QUD54_RS09345 Genome accession   NZ_AP027370
Coordinates   1801385..1803199 (-) Length   604 a.a.
NCBI ID   WP_286336464.1    Uniprot ID   -
Organism   Hydrogenimonas cancrithermarum strain ISO32     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1796385..1808199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD54_RS09330 (HCR_18230) - 1798791..1799192 (-) 402 WP_286336461.1 hypothetical protein -
  QUD54_RS09335 (HCR_18240) - 1799189..1800874 (-) 1686 WP_286336462.1 Hpt domain-containing protein -
  QUD54_RS09340 (HCR_18250) - 1800886..1801299 (-) 414 WP_286336463.1 PAS domain-containing protein -
  QUD54_RS09345 (HCR_18260) uvrC 1801385..1803199 (-) 1815 WP_286336464.1 excinuclease ABC subunit UvrC Machinery gene
  QUD54_RS09350 (HCR_18270) - 1803196..1803642 (-) 447 WP_286336465.1 hypothetical protein -
  QUD54_RS09355 (HCR_18280) nadB 1803738..1805195 (+) 1458 WP_286336466.1 L-aspartate oxidase -
  QUD54_RS09360 (HCR_18290) nhaD 1805289..1806596 (+) 1308 WP_286336467.1 sodium:proton antiporter NhaD -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69337.15 Da        Isoelectric Point: 9.5462

>NTDB_id=100932 QUD54_RS09345 WP_286336464.1 1801385..1803199(-) (uvrC) [Hydrogenimonas cancrithermarum strain ISO32]
MIESVKNLPDKPGIYQYFDKDGKLLYVGKAKSLKKRVKSYFRFTPTLAPAPTLGPRIYQMVAQAVRIETIVTPSESDALL
LENSLIKQLKPKYNILLRDDKTYPYIYIDLSEPFPRFELTRKVVKGKRVKYFGPFPHGARAILDSLYELVPLVQKKGCLK
GKKACLFHQIGRCMAPCEGKIDEKEYAELVEEAFSYIHHKKRLQRALEKRMHFYAESLRFEEAAQIRDRIEAIGKIEEFS
SADLARLEDLDIFAAAFDDEGGVLVRLFMREGKIVASSHTYLHLHDETDLSEVYRRSILEFYGSETPFTATAILTAHPFD
EQEELSALLSERIGKHIAITTPKRGDKRRLTELGVQNAKELLRQKSLRPKPELPEKIRDLLGLRQAPERIEIFDNSHLAG
EAPVGAMVVREKEKWDKSSYRHYNLTARDEYHQMEQMLSQRIGSFEKSPPPDLWVIDGGETLRQLALTLLKRKGVDLPVV
GIAKEKIDAKAHRAKGAAKDILYTDEGEMRLMPSDARLQWFQRLRDEAHRFAIAFHKKQRLKEDKKISLLEAKGIGPAKV
KRLIDYFGTFDAIKEADLETLGRVLNKKDAQSIYLYLHPPSTDE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=100932 QUD54_RS09345 WP_286336464.1 1801385..1803199(-) (uvrC) [Hydrogenimonas cancrithermarum strain ISO32]
ATGATCGAGAGCGTTAAAAACCTCCCCGACAAACCGGGGATCTACCAATATTTCGACAAAGACGGGAAGCTTCTTTATGT
CGGAAAGGCCAAAAGCCTCAAAAAACGGGTCAAAAGCTATTTCCGTTTCACACCTACACTCGCCCCCGCCCCCACTCTCG
GCCCCCGAATCTATCAGATGGTCGCACAGGCCGTCAGGATCGAAACGATCGTGACACCGAGCGAAAGCGATGCACTGCTG
CTGGAAAACTCGCTGATCAAACAGCTCAAACCCAAATACAACATCCTTCTTCGCGACGACAAGACTTACCCCTACATCTA
CATCGACCTGAGCGAACCGTTCCCAAGGTTCGAACTGACGCGAAAAGTGGTCAAAGGGAAAAGAGTGAAATATTTCGGCC
CTTTTCCTCACGGTGCGAGGGCGATTCTAGATTCGCTCTACGAGCTGGTGCCGCTGGTACAGAAAAAAGGGTGCCTCAAA
GGGAAAAAGGCGTGTCTGTTCCACCAGATCGGACGCTGCATGGCTCCGTGCGAAGGGAAGATCGACGAAAAGGAGTATGC
CGAACTCGTCGAAGAGGCTTTCAGCTATATCCATCACAAAAAACGCCTGCAGCGTGCACTCGAAAAGAGAATGCACTTCT
ACGCCGAATCGCTCCGATTCGAAGAGGCGGCACAGATCCGTGACCGCATCGAGGCGATCGGGAAAATCGAAGAGTTCTCG
AGTGCCGATCTCGCCAGGCTCGAAGACCTCGATATCTTTGCCGCGGCGTTCGACGACGAGGGAGGTGTACTGGTACGCCT
TTTCATGCGGGAAGGGAAAATCGTCGCCTCCAGCCACACCTATCTGCACCTGCACGACGAGACCGATCTGAGCGAAGTCT
ACCGCAGAAGTATCCTCGAGTTTTACGGCAGCGAAACGCCCTTTACGGCGACGGCTATCTTGACGGCACACCCCTTCGAC
GAGCAGGAGGAGCTCTCCGCACTGTTGAGCGAGCGCATCGGAAAACATATCGCCATCACGACACCGAAACGGGGTGACAA
ACGGCGGCTGACAGAGCTGGGAGTGCAGAATGCGAAGGAACTGCTCAGACAAAAAAGCCTTCGTCCCAAACCCGAACTTC
CGGAGAAGATCCGCGATCTGCTCGGACTCCGGCAGGCACCGGAGCGCATCGAAATTTTCGACAACTCCCACCTTGCGGGC
GAAGCGCCTGTGGGAGCGATGGTCGTCAGGGAAAAAGAGAAGTGGGACAAAAGCTCCTACCGCCACTACAATCTTACGGC
AAGGGACGAGTACCACCAGATGGAGCAGATGCTCTCCCAGCGTATCGGTTCGTTCGAAAAATCCCCGCCTCCGGACCTGT
GGGTCATCGACGGCGGCGAGACACTCCGGCAGCTTGCGCTGACGCTGCTGAAAAGAAAAGGGGTCGACCTGCCCGTCGTC
GGGATCGCGAAAGAGAAAATCGATGCGAAGGCACACCGGGCGAAAGGGGCGGCGAAAGATATTCTCTACACCGATGAGGG
GGAGATGCGGCTGATGCCGAGCGATGCACGTTTGCAGTGGTTTCAAAGGCTCAGAGACGAAGCGCATCGGTTCGCCATCG
CTTTCCATAAAAAACAGCGCCTGAAAGAGGACAAAAAGATCTCTCTTCTCGAAGCCAAGGGGATCGGGCCCGCCAAAGTG
AAACGGCTCATCGACTATTTCGGAACGTTCGACGCCATCAAAGAGGCCGACCTCGAAACACTGGGGAGAGTTCTAAACAA
AAAAGATGCCCAGTCGATATATCTGTATCTTCATCCGCCATCCACAGACGAATAG

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(201-235)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(379-533)

Helix-hairpin-helix domain (HHH_5)

(548-595)

GIY-YIG catalytic domain (GIY-YIG)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.831

97.682

0.487

Multiple sequence alignment