Detailed information NTG1009319

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABNK63_RS13495
• Genome accession: NZ_CP157948
• Coordinates: 2979807..2981204 (+)
• Length: 465 a.a.
• NCBI ID: WP_007808368.1
• Uniprot ID: I4VYK6
• Organism: Rhodanobacter sp. IGA1.0
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2974807..2986204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNK63_RS13480 (ABNK63_13460)	sucD	2975762..2976634 (-)	873	WP_007808373.1	succinate--CoA ligase subunit alpha	-
ABNK63_RS13485 (ABNK63_13465)	sucC	2976649..2977812 (-)	1164	WP_007808372.1	ADP-forming succinate--CoA ligase subunit beta	-
ABNK63_RS13490 (ABNK63_13470)	-	2978100..2979749 (+)	1650	WP_007808370.1	HAMP domain-containing sensor histidine kinase	-
ABNK63_RS13495 (ABNK63_13475)	pilR	2979807..2981204 (+)	1398	WP_007808368.1	sigma-54 dependent transcriptional regulator	Regulator
ABNK63_RS13500 (ABNK63_13480)	-	2981326..2982867 (-)	1542	WP_350015912.1	response regulator	-
ABNK63_RS13505 (ABNK63_13485)	-	2982971..2983417 (-)	447	WP_007808365.1	response regulator	-
ABNK63_RS13510 (ABNK63_13490)	-	2983414..2985207 (-)	1794	WP_350015913.1	ATP-binding protein	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 49949.22 Da
• Isoelectric Point: 6.0336

>NTDB_id=1009319 ABNK63_RS13495 WP_007808368.1 2979807..2981204(+) (pilR) [Rhodanobacter sp. IGA1.0]
MTAQTVLVIDDERDIRELLTITLGRMDLQVDAVGTVGDARRALAERTYDLCFTDMRLPDGNGQEVIELIASEHPDMPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRGLVRTALRLAEEKRNGGATAAPGDGGNRLIGDSAAMQQVRATIGKLAR
NQAPVYIAGESGVGKELVARLIHEQGPRASGPFVPVNCGAIPSELMESEFFGHRKGSFTGASADKEGLFQAAQGGTLFLD
EVAELPLHMQVKLLRAIQEKAVRPIGGRDEIPVDVRILSATHKNLGQLVEQGQFRQDLFYRINVIELRVPPLRERRGDVP
QLSAFILKALAGKSGEPVGQLAPAARDALAAYDFPGNVRELENVLERAMAMCDGHTIEAVDLMLPQRSARVGTEPLAGTT
TATAATPVPAAAGADGGLDDYISNLERTAIVKALEESRYNKTAAARKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1398 bp

>NTDB_id=1009319 ABNK63_RS13495 WP_007808368.1 2979807..2981204(+) (pilR) [Rhodanobacter sp. IGA1.0]
ATGACCGCACAGACCGTACTGGTCATCGACGATGAACGCGACATTCGCGAGCTGCTGACGATCACGCTGGGCCGCATGGA
CCTGCAGGTCGACGCAGTGGGTACGGTCGGCGATGCACGCCGCGCCCTGGCCGAGCGCACGTACGATCTCTGCTTCACCG
ACATGCGCCTTCCCGACGGCAACGGACAGGAAGTGATCGAGCTGATCGCCAGCGAACATCCGGACATGCCGGTGGCGATG
ATCACTGCCTATGGCAACGTCGACGCCGCAGTCAACGCACTGAAGGCCGGTGCCTTCGACTTCGTCTCCAAGCCGGTCGA
CATCCAGATGCTGCGCGGACTGGTCCGCACCGCCCTGCGCCTGGCCGAGGAAAAGCGCAACGGCGGCGCGACTGCCGCGC
CCGGCGATGGCGGCAACCGGTTGATCGGCGATTCGGCGGCGATGCAGCAGGTGCGCGCCACCATCGGCAAGCTCGCGCGC
AACCAGGCGCCGGTCTACATCGCCGGCGAATCCGGCGTGGGCAAGGAACTGGTTGCCCGGCTGATCCACGAGCAGGGTCC
CCGTGCCAGCGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATTCCGTCCGAACTGATGGAAAGCGAGTTCTTCGGCCATC
GCAAGGGCAGCTTCACCGGCGCCAGCGCCGACAAGGAAGGCCTGTTCCAGGCCGCCCAGGGCGGCACGCTGTTCCTCGAC
GAGGTGGCCGAGCTGCCGCTGCACATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCGGTACGCCCGATCGGCGG
CCGCGACGAGATCCCGGTCGATGTGCGCATCCTCTCGGCCACCCACAAGAACCTGGGCCAGCTGGTCGAGCAGGGCCAGT
TCCGCCAGGACCTGTTCTACCGCATCAACGTGATCGAACTGCGCGTACCGCCGCTGCGCGAGCGCCGTGGCGACGTGCCG
CAGCTGTCGGCCTTCATCCTCAAGGCGCTGGCCGGCAAGAGCGGCGAGCCGGTGGGTCAGCTGGCGCCGGCCGCACGCGA
TGCACTGGCCGCCTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACGTGCTCGAACGCGCGATGGCGATGTGCGACG
GCCACACCATCGAGGCGGTCGACCTGATGCTGCCCCAGCGCAGCGCCCGCGTCGGCACCGAGCCACTGGCCGGCACCACC
ACGGCGACGGCGGCCACCCCGGTCCCCGCTGCCGCGGGCGCGGATGGCGGCCTGGACGACTACATCAGCAACCTCGAGCG
GACCGCGATCGTCAAGGCGCTGGAAGAATCCCGGTACAACAAGACCGCGGCCGCCCGCAAACTCGGCATCACCTTCCGCG
CGCTGCGCTACAAGCTCAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-114)

• Bacterial regulatory protein, Fis family (HTH_8) (423-462)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

3D structure

• AlphaFold DB: I4VYK6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.075	100	0.611
pilR	Acinetobacter baumannii strain A118	47.3	99.57	0.471