Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABNK63_RS04150 Genome accession   NZ_CP157948
Coordinates   950451..950861 (+) Length   136 a.a.
NCBI ID   WP_274378300.1    Uniprot ID   -
Organism   Rhodanobacter sp. IGA1.0     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 945451..955861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK63_RS04125 (ABNK63_04120) - 946227..947153 (-) 927 WP_007809648.1 aspartate carbamoyltransferase catalytic subunit -
  ABNK63_RS04130 (ABNK63_04125) ruvX 947183..947632 (-) 450 WP_007809646.1 Holliday junction resolvase RuvX -
  ABNK63_RS04135 (ABNK63_04130) - 947629..948198 (-) 570 WP_007809643.1 YqgE/AlgH family protein -
  ABNK63_RS04140 (ABNK63_04135) - 948252..949121 (-) 870 WP_350016771.1 energy transducer TonB -
  ABNK63_RS04145 (ABNK63_04140) gshB 949118..950095 (-) 978 WP_007809639.1 glutathione synthase -
  ABNK63_RS04150 (ABNK63_04145) pilG 950451..950861 (+) 411 WP_274378300.1 response regulator Regulator
  ABNK63_RS04155 (ABNK63_04150) - 950884..951255 (+) 372 WP_007809635.1 response regulator -
  ABNK63_RS04160 (ABNK63_04155) - 951252..951791 (+) 540 WP_007809622.1 chemotaxis protein CheW -
  ABNK63_RS04165 (ABNK63_04160) - 951920..953950 (+) 2031 WP_007809620.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14988.42 Da        Isoelectric Point: 8.5130

>NTDB_id=1009308 ABNK63_RS04150 WP_274378300.1 950451..950861(+) (pilG) [Rhodanobacter sp. IGA1.0]
MNLNVSANDLAGLKVMVIDDSKTIRRTAETLLKKEGCDVLTAVDGFEALAKISDQKPAIIFVDIMMPRLDGYQTCALIKN
NPQFRATPVIMLSSKDGLFDKARGRIVGAEQYLTKPFTRDELLGAIHRHVSTVSSH

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1009308 ABNK63_RS04150 WP_274378300.1 950451..950861(+) (pilG) [Rhodanobacter sp. IGA1.0]
GTGAATTTGAACGTGAGTGCTAACGACTTGGCTGGTCTCAAGGTCATGGTGATCGATGACTCGAAGACCATCCGCCGCAC
GGCGGAGACCCTTCTGAAGAAGGAGGGCTGCGACGTGCTGACTGCGGTCGACGGGTTCGAGGCCCTGGCCAAGATCTCCG
ACCAGAAGCCGGCGATCATCTTCGTCGACATCATGATGCCGCGGCTGGACGGTTATCAGACCTGCGCGCTGATCAAGAAC
AATCCGCAGTTCCGTGCTACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCGCGCGGCCGCATCGT
GGGTGCCGAACAGTATCTGACCAAGCCGTTCACGCGTGACGAGCTGCTTGGTGCCATCCATCGCCATGTCAGCACGGTAT
CGAGCCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.171

90.441

0.662
  vicR Streptococcus mutans UA159

41.88

86.029

0.36

Multiple sequence alignment