Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   H0504_RS08515 Genome accession   NZ_LR822011
Coordinates   1653685..1654002 (-) Length   105 a.a.
NCBI ID   WP_011226623.1    Uniprot ID   Q5M2G4
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648685..1659002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS08485 (STHERMO_1903) - 1649034..1649696 (-) 663 WP_179971686.1 CPBP family intramembrane glutamic endopeptidase -
  H0504_RS08490 (STHERMO_1905) - 1649799..1650247 (-) 449 Protein_1635 CAAX protease -
  H0504_RS09850 (STHERMO_1906) - 1650321..1650746 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  H0504_RS08500 (STHERMO_1908) - 1650989..1651186 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  H0504_RS08505 (STHERMO_1909) - 1651435..1652628 (-) 1194 WP_022096898.1 acetate kinase -
  H0504_RS08510 (STHERMO_1910) comGH 1652684..1653640 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  H0504_RS08515 (STHERMO_1911) comGG 1653685..1654002 (-) 318 WP_011226623.1 competence type IV pilus minor pilin ComGG Machinery gene
  H0504_RS08520 (STHERMO_1912) comGF 1653980..1654417 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0504_RS08525 (STHERMO_1913) comGE 1654401..1654694 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  H0504_RS08530 (STHERMO_1914) comGD 1654666..1655094 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  H0504_RS08535 (STHERMO_1915) comGC 1655054..1655380 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0504_RS08540 (STHERMO_1916) comGB 1655377..1656477 (-) 1101 WP_148148900.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0504_RS08545 (STHERMO_1917) comGA/cglA/cilD 1656359..1657300 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  H0504_RS08550 (STHERMO_1918) - 1657381..1657743 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11796.88 Da        Isoelectric Point: 10.6334

>NTDB_id=1009282 H0504_RS08515 WP_011226623.1 1653685..1654002(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_23]
MLLKKQVRGGVLLYALFMAGIFTLLLQAYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVIVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1009282 H0504_RS08515 WP_011226623.1 1653685..1654002(-) (comGG) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGCTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGATTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M2G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae D39

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae R6

42.222

85.714

0.362
  comGG/cglG Streptococcus pneumoniae TIGR4

42.222

85.714

0.362

Multiple sequence alignment