Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ABKA15_RS03750 Genome accession   NZ_CP157941
Coordinates   755151..756383 (+) Length   410 a.a.
NCBI ID   WP_049512931.1    Uniprot ID   A0A7L8W6W9
Organism   Streptococcus sp. KHUD_010     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 753401..764178 755151..756383 within 0


Gene organization within MGE regions


Location: 753401..764178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS03735 (ABKA15_03730) - 753401..754240 (+) 840 WP_049512935.1 thymidylate synthase -
  ABKA15_RS03740 (ABKA15_03735) - 754427..754939 (+) 513 WP_049512933.1 dihydrofolate reductase -
  ABKA15_RS03745 (ABKA15_03740) - 754939..755112 (+) 174 WP_003024903.1 hypothetical protein -
  ABKA15_RS03750 (ABKA15_03745) clpX 755151..756383 (+) 1233 WP_049512931.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ABKA15_RS03755 (ABKA15_03750) yihA 756395..756982 (+) 588 WP_049512928.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ABKA15_RS03760 (ABKA15_03755) - 757104..757811 (+) 708 WP_049512925.1 glucosaminidase domain-containing protein -
  ABKA15_RS03765 (ABKA15_03760) - 757984..759729 (+) 1746 WP_350015384.1 ABC transporter ATP-binding protein -
  ABKA15_RS03770 (ABKA15_03765) - 759710..761458 (+) 1749 WP_049512922.1 ABC transporter ATP-binding protein -
  ABKA15_RS03775 (ABKA15_03770) - 761479..763014 (-) 1536 WP_049512920.1 ABC-F family ATP-binding cassette domain-containing protein -
  ABKA15_RS03780 (ABKA15_03775) - 763438..764178 (-) 741 WP_049512918.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45661.18 Da        Isoelectric Point: 4.4242

>NTDB_id=1009112 ABKA15_RS03750 WP_049512931.1 755151..756383(+) (clpX) [Streptococcus sp. KHUD_010]
MPTNRTNEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLSILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREDEEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDETGSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVDDLVR
ILREPKNALVKQYQTLLSYDDVKLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1009112 ABKA15_RS03750 WP_049512931.1 755151..756383(+) (clpX) [Streptococcus sp. KHUD_010]
ATGCCTACAAATCGTACGAATGAAATGATGGTTTATTGCTCTTTTTGTGGTAAAAGCCAAGAAGAAGTCCAAAAAATTAT
CGCAGGAAATAATGCCTTTATTTGTAATGAATGTGTGGAATTAGCACAAGAAATCATCAGAGAGGAACTAGCAGAAGAAG
TGCTAGCAGACTTGTCAGAAGTGCCAAAACCACAAGAACTACTCAGTATTTTGAATCACTATGTGATTGGACAAGACCGT
GCTAAGCGTGCTTTGGCTGTGGCTGTCTATAATCACTATAAACGCATCAATTTTCATGATAATCGTGAAGATGAGGAAGA
TGTCGAATTGCAGAAATCCAATATCCTTATGATTGGTCCAACTGGTTCTGGCAAGACCTTCCTCGCTCAAACCTTGGCAA
AAAGTCTGAATGTTCCTTTTGCGATTGCAGATGCGACAGCTTTGACAGAAGCTGGGTATGTCGGAGAAGATGTTGAAAAT
ATTCTCTTGAAACTCTTGCAAGCAGCAGATTTCAATATTGAGCGTGCTGAGCGTGGTATCATCTATGTAGATGAGATTGA
CAAAATTGCGAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGTGTTCAGCAAGCACTCCTCAAGA
TTATTGAAGGAACTGTAGCCAGCGTACCTCCGCAAGGCGGCCGCAAGCATCCTCAACAAGAGATGATTCAAGTAGATACG
AAAAATATTCTCTTTATCGTTGGTGGTGCATTTGACGGTATTGAAGAAATTGTCAAACAACGACTAGGCGAAAAAATTAT
CGGTTTTGGTCAAAACAACAAAGCCATTGATGAAACTGGTTCTTATATGCAAGAAATCATCTCTGAAGATATTCAAAAAT
TTGGCTTGATTCCGGAATTGATTGGTCGTTTGCCTGTGTTTGCAGCGCTTGAGCCTTTAACAGTTGATGATTTGGTGCGA
ATCCTTCGCGAACCAAAGAATGCTTTAGTGAAGCAATATCAGACTCTTCTTTCTTATGATGATGTCAAATTGGAGTTTGA
TGATGACGCTCTTCAGGAAATCGCTAACAAGGCCATTGAACGCAAGACAGGTGCGCGTGGATTACGTTCGATTATCGAGG
AGACTATGATGGATGTCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAGCTGGTACGGATTACTAAGGAAGCAGTTGAC
GGAACGGATAAGCCGATTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8W6W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.458

98.049

0.573

Multiple sequence alignment