Detailed information NTG1008722

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABNP31_RS03315
• Genome accession: NZ_CP157874
• Coordinates: 724401..725267 (-)
• Length: 288 a.a.
• NCBI ID: WP_085665707.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain C-B8A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 719401..730267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP31_RS03285 (ABNP31_03285)	-	720286..721581 (-)	1296	WP_025337608.1	NAD(P)/FAD-dependent oxidoreductase	-
ABNP31_RS03290 (ABNP31_03290)	-	721666..721839 (-)	174	WP_013970765.1	DUF3094 family protein	-
ABNP31_RS03295 (ABNP31_03295)	-	721973..722602 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
ABNP31_RS03300 (ABNP31_03300)	-	722736..723443 (+)	708	WP_085618693.1	energy-coupling factor ABC transporter permease	-
ABNP31_RS03305 (ABNP31_03305)	yacG	723581..723781 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
ABNP31_RS03310 (ABNP31_03310)	coaE	723778..724401 (-)	624	WP_075043664.1	dephospho-CoA kinase	-
ABNP31_RS03315 (ABNP31_03315)	pilD	724401..725267 (-)	867	WP_085665707.1	A24 family peptidase	Machinery gene
ABNP31_RS03320 (ABNP31_03320)	-	725270..726478 (-)	1209	WP_350012986.1	type II secretion system F family protein	-
ABNP31_RS03325 (ABNP31_03325)	-	726695..727105 (+)	411	WP_350012987.1	pilin	-
ABNP31_RS03335 (ABNP31_03335)	-	727418..728635 (+)	1218	WP_054881355.1	tyrosine-type recombinase/integrase	-
ABNP31_RS03340 (ABNP31_03340)	-	728632..729378 (+)	747	WP_350012988.1	hypothetical protein	-
ABNP31_RS03345 (ABNP31_03345)	-	729495..729698 (+)	204	WP_082438022.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32059.27 Da
• Isoelectric Point: 7.9596

>NTDB_id=1008722 ABNP31_RS03315 WP_085665707.1 724401..725267(-) (pilD) [Pseudomonas asiatica strain C-B8A]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLVLRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=1008722 ABNP31_RS03315 WP_085665707.1 724401..725267(-) (pilD) [Pseudomonas asiatica strain C-B8A]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGTCCTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTTCCGGATGCGCTGGTGTTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGCTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.545	95.486	0.521
pilD	Acinetobacter baumannii D1279779	52.857	97.222	0.514
pilD	Acinetobacter nosocomialis M2	52.143	97.222	0.507
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Neisseria gonorrhoeae MS11	50.929	93.403	0.476