Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABNP33_RS02000 Genome accession   NZ_CP157872
Coordinates   417559..418188 (-) Length   209 a.a.
NCBI ID   WP_017400445.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412559..423188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS01965 (ABNP33_01965) mlaE 412892..413668 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ABNP33_RS01970 (ABNP33_01970) - 413668..414348 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABNP33_RS01975 (ABNP33_01975) - 414375..415016 (+) 642 WP_002116826.1 ABC transporter substrate-binding protein -
  ABNP33_RS01980 (ABNP33_01980) - 415028..415315 (+) 288 WP_005078357.1 STAS domain-containing protein -
  ABNP33_RS01985 (ABNP33_01985) - 415388..416401 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  ABNP33_RS01990 (ABNP33_01990) - 416560..417141 (+) 582 WP_005804599.1 TIGR00730 family Rossman fold protein -
  ABNP33_RS01995 (ABNP33_01995) mutT 417156..417557 (+) 402 WP_002116701.1 NUDIX domain-containing protein -
  ABNP33_RS02000 (ABNP33_02000) comF 417559..418188 (-) 630 WP_017400445.1 phosphoribosyltransferase family protein Machinery gene
  ABNP33_RS02005 (ABNP33_02005) recG 418181..420226 (-) 2046 WP_349914037.1 ATP-dependent DNA helicase RecG -
  ABNP33_RS02010 (ABNP33_02010) - 420247..421062 (+) 816 WP_349914039.1 NAD-dependent epimerase/dehydratase family protein -
  ABNP33_RS02015 (ABNP33_02015) - 421142..422125 (+) 984 WP_349914041.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24486.71 Da        Isoelectric Point: 9.9656

>NTDB_id=1008686 ABNP33_RS02000 WP_017400445.1 417559..418188(-) (comF) [Acinetobacter pittii strain bac73]
MFNFLNFQPLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCISIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1008686 ABNP33_RS02000 WP_017400445.1 417559..418188(-) (comF) [Acinetobacter pittii strain bac73]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAGTCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGTTTAAATGAGCACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCATATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823

Multiple sequence alignment