Detailed information NTG1008631

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABNP36_RS06320
• Genome accession: NZ_CP157870
• Coordinates: 1414881..1417097 (+)
• Length: 738 a.a.
• NCBI ID: WP_111475459.1
• Uniprot ID: -
• Organism: Pseudomonas fulva strain OsEnb_ALM_C17
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1409881..1422097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP36_RS06300 (ABNP36_06290)	-	1411745..1412368 (+)	624	WP_027914345.1	glutathione S-transferase	-
ABNP36_RS06305 (ABNP36_06295)	-	1412514..1413446 (+)	933	WP_027914346.1	ABC transporter ATP-binding protein	-
ABNP36_RS06310 (ABNP36_06300)	-	1413443..1414222 (+)	780	WP_023533108.1	ABC transporter permease	-
ABNP36_RS06315 (ABNP36_06305)	-	1414106..1414738 (-)	633	WP_115933573.1	DUF2062 domain-containing protein	-
ABNP36_RS06320 (ABNP36_06310)	comA	1414881..1417097 (+)	2217	WP_111475459.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABNP36_RS06325 (ABNP36_06315)	exbB	1417159..1417794 (+)	636	WP_023533075.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABNP36_RS06330 (ABNP36_06320)	-	1417791..1418225 (+)	435	WP_028687688.1	biopolymer transporter ExbD	-
ABNP36_RS06335 (ABNP36_06325)	lpxK	1418225..1419226 (+)	1002	WP_111475460.1	tetraacyldisaccharide 4'-kinase	-
ABNP36_RS06340 (ABNP36_06330)	-	1419269..1419454 (+)	186	WP_003247142.1	Trm112 family protein	-
ABNP36_RS06345 (ABNP36_06335)	kdsB	1419451..1420212 (+)	762	WP_023533083.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABNP36_RS06350 (ABNP36_06340)	-	1420212..1420676 (+)	465	WP_028687685.1	low molecular weight protein-tyrosine-phosphatase	-
ABNP36_RS06355 (ABNP36_06345)	murB	1420673..1421692 (+)	1020	WP_028687684.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 79512.21 Da
• Isoelectric Point: 10.4736

>NTDB_id=1008631 ABNP36_RS06320 WP_111475459.1 1414881..1417097(+) (comA) [Pseudomonas fulva strain OsEnb_ALM_C17]
MRTGMLALALGLLSLGLVPQLPSVGWLLLLAAGAVVSLFTRGWLLGVFLLGFCWACWSAKQAMDDRLAPGLEGRTLWLEG
RVVGLPARTAQGVRFDLEGAHSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPGGLLNPYGPDREAQLLARRVGASG
TVKAGELLTPAPASWRDALRERLLAVEANGRQAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAV
VAWLARWGLWPARVPWLPWACALAMSAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFHPLLLALVAVLLFEPL
AALLPGFWLSFGAVATLIYTFSARLGAWQPWQAWTRAQWVIAVGLLPVLLAVGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGSAGEALLWLAGGLLDILFRALALVAQQRPAWVPPALPLWAWLLVCLGALLLLLPRGVPLRGLGAVMLVALW
APREPVPDGQVEVWQLDVGQGLAVLLRTRQHSLLYDAGPARGESDLGERVVLPTLRKLGVDSLDLLVVSHAHADHAGGAG
AIGRGLPIRRAIGGEPLEAVPLQPCVSGEQWEWDGVRFSLWRWADARTSNDRSCVLLVEASGERLLLAGDMEAGAERAWL
AAMDSPRIDWLQSPHHGSRSSSSEAFIRAAAPRGVLISRGRNNSFGHPHAQVVERYRRHGMTLHDTAVEGALHLVLGVQG
KVEGMRSQRRFWRDARGG

Nucleotide

• Length: 2217 bp

>NTDB_id=1008631 ABNP36_RS06320 WP_111475459.1 1414881..1417097(+) (comA) [Pseudomonas fulva strain OsEnb_ALM_C17]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGTCTGCTCAGCCTCGGCCTGGTGCCTCAACTGCCATCGGTCGGATGGCT
GTTATTGCTTGCGGCGGGCGCTGTCGTCAGTCTGTTCACCCGCGGGTGGTTGCTGGGCGTGTTCCTGCTGGGCTTTTGCT
GGGCCTGCTGGTCTGCCAAGCAGGCCATGGATGATCGTCTGGCGCCAGGGCTCGAGGGTCGCACGTTATGGCTGGAAGGG
CGCGTGGTCGGCCTGCCGGCGCGCACCGCGCAAGGCGTTCGCTTCGACCTTGAGGGGGCGCATTCCCGGCGTGCCGAATT
GCCGCAACGCCTGCAATTGAGCTGGTTTGACGGGCCACCGCTGCGTGCCGGCGAGCAGTGGCGCCTGGCCGTGACCCTGC
AGCGGCCGGGCGGGCTTTTGAACCCCTACGGGCCTGACCGGGAGGCGCAGTTGCTGGCACGTCGGGTCGGCGCCAGCGGA
ACGGTCAAAGCCGGGGAGTTACTGACGCCCGCGCCAGCCAGCTGGCGCGATGCGCTGCGCGAGCGGCTACTGGCTGTCGA
GGCCAATGGTCGGCAAGCCGCGCTGGTGGCGCTGGTGCTTGGCGATGGGGCAGGCCTGGCACGCGAGGACTGGCAGGCGC
TACAGGCAACCGGCACCGTGCACCTGCTGGTGATTTCGGGCCAGCACATCGGCCTGGTGGCGGGTCTGCTCTACGCCGTG
GTCGCGTGGTTGGCCCGCTGGGGGCTGTGGCCGGCCCGGGTGCCGTGGCTGCCTTGGGCCTGTGCGCTGGCCATGAGTGC
GGCGCTGGCCTACGGCTGGCTGGCTGGGGCAGGGGTGCCAGTACAGCGCGCCTGTCTGATGCTGGCCGTGGTGCTGCTGT
GGCGGCTGCGCTTTCGTCATCTGGGTGCGTTTCACCCCTTGTTACTTGCGCTGGTTGCCGTACTGCTGTTCGAGCCATTG
GCAGCGCTGCTTCCAGGTTTCTGGTTGTCATTCGGCGCCGTGGCCACGCTCATCTACACCTTCAGTGCCCGGCTAGGGGC
TTGGCAACCCTGGCAGGCCTGGACGCGAGCGCAGTGGGTCATCGCCGTCGGGCTGCTCCCAGTGCTGCTGGCGGTGGGCT
TGCCGGTGAGCCTGAGTGCCCCGCTGGCCAACCTGGTGGCGGTGCCGTGGGTGAGCTTGGCGGTATTGCCGCTGGCGCTA
TTGGGCACCTTGTTGCTGCCCTTGGGAAGCGCAGGTGAGGCCTTGCTGTGGCTGGCAGGCGGCCTGCTGGATATCTTGTT
TCGCGCCTTGGCGCTGGTCGCCCAGCAGCGCCCGGCATGGGTGCCTCCCGCATTGCCGTTGTGGGCCTGGCTGCTGGTCT
GCCTGGGTGCACTGCTGCTGTTGCTGCCACGGGGTGTGCCGCTGCGTGGGTTGGGTGCGGTGATGCTCGTGGCGCTCTGG
GCACCTCGCGAGCCTGTCCCGGATGGCCAGGTCGAGGTGTGGCAGCTGGACGTGGGCCAAGGCTTGGCGGTGTTGCTGCG
TACCCGGCAGCACAGTCTGCTGTATGACGCAGGTCCAGCCAGGGGCGAAAGCGATCTGGGTGAACGGGTCGTGTTGCCCA
CCTTGCGCAAGTTGGGGGTCGACAGCCTGGATCTGCTGGTGGTCAGTCACGCCCATGCCGACCACGCCGGCGGTGCGGGT
GCAATCGGGCGCGGGCTGCCGATCAGGCGGGCGATTGGCGGTGAGCCGCTGGAAGCGGTTCCGTTACAGCCTTGCGTCAG
TGGCGAGCAGTGGGAGTGGGACGGCGTGCGCTTTTCCCTGTGGCGCTGGGCGGATGCGCGCACCAGCAACGACCGCTCCT
GCGTGTTGCTGGTCGAGGCGTCGGGCGAGCGGTTGCTGCTGGCCGGGGACATGGAGGCGGGGGCCGAACGTGCGTGGCTG
GCTGCCATGGACTCACCACGCATCGACTGGCTGCAGTCGCCTCACCACGGCAGCCGCAGTTCGTCGAGCGAAGCCTTCAT
CCGCGCTGCGGCCCCGCGTGGGGTACTGATATCCCGCGGGCGCAACAACAGCTTCGGGCATCCCCATGCACAGGTGGTCG
AACGCTATCGCAGACATGGCATGACCCTTCACGACACGGCGGTGGAGGGGGCGTTGCATCTGGTGCTCGGTGTGCAAGGA
AAGGTCGAGGGTATGCGCAGCCAGCGCCGGTTCTGGCGTGACGCCAGGGGTGGTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-677)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.554	97.425	0.57
comA	Ralstonia pseudosolanacearum GMI1000	35.294	100	0.374